Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26300 337 / 2e-110 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G48280 333 / 8e-109 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G26290 332 / 2e-108 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1) AT3G26310 332 / 3e-108 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26330 330 / 8e-108 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT1G13080 323 / 1e-104 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT4G31500 321 / 4e-104 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT3G48320 321 / 4e-104 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT5G25140 321 / 5e-104 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT3G48270 320 / 5e-104 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040120 [exp] 680 / 0 AT3G48280 377 / 5e-126 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10016601 [exp] 471 / 1e-162 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10009903 [exp] 453 / 2e-155 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10030708 [exp] 438 / 2e-149 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10019157 [exp] 437 / 3e-149 AT3G48300 358 / 1e-118 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) Lus10012879 [exp] 426 / 2e-144 AT3G26330 409 / 6e-138 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10026252 [exp] 436 / 1e-143 AT5G25120 383 / 2e-123 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10028926 [exp] 424 / 2e-143 AT3G26330 382 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10013194 [exp] 423 / 2e-143 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 474 / 7e-164 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 448 / 1e-153 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 442 / 5e-151 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 441 / 7e-151 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 440 / 2e-150 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 438 / 1e-149 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 436 / 5e-149 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 422 / 1e-143 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.001G365100 [exp] 416 / 7e-141 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.012G089900 [exp] 395 / 5e-133 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10030924 pacid=23166873 polypeptide=Lus10030924 locus=Lus10030924.g ID=Lus10030924.BGIv1.0 annot-version=v1.0 ATGGACGAGCAAATTTTTTTGCCAATTTTTCTCTTCTCCACCGCCTTAATATTAGCAGCCACCGCATGGAAGTTGAAGAAGGGATCATCGAAGAGCACAA ATTATAATTACTACAATAACCTTCCGCCGGGACCACCGTGGAAGCTTCCGGTGATCGGCCACATGCTCCACTTGCTGGGGTCCCAACCGCACCACCGCCT CCGAGACTTGGCCAAGAGCTACGGCCCCAACCTGATATTCCTCCAGCTGGGCGAGACGCGAAACGTAGTCGTCTCGTCGGCCGAGTCGGCAAGAGAGGTG ATGAAGACCCACGACATCAACTTCGCCAACAGGCCGGTCATGCTCGGCGGGACCATCATGGGCTACGACTCAACCGACGTGGCGTTCGCGCCGTATGGCC CCTACTGGCGGCAGCTGAAGAAGATATGCACCGTGGAGCTGCTGAGCTGGAAGCGGGTCCAGTCATTTCGCCACGTCAGGGAAGAGGAGGTGTCCCGCTA CGTCGACAAGATATCATCCACGGCAGCAGCTGGCGGTGTCATCGACCTGAGTAAGGAGACGAGGATGTACACGTCAAGCGTAATAGCCAGGTCAGCGTTC GGCGAAGAGTGTCGGGAGGCCGAGGAGTTCATGGGTCTCCTCAAGGAAAGTACGGGGGTGGTCGGAGGTTTCAGCGTGGAGGATATGTTCCCTTCGATGA CGTGGCTCACAGTTTTACTCGGGGTCAGATCTAGTATGGAGAAAATCAGCCGAGGATTGGATAAGATCCTAGATGGCATCATCAGTGAACATAAACGACG ACGACGTGGACGTGGACATGGAGATGATGACGTGGAGGAAAAAGGGGATCTTGTGGATATCCTGCTTAAGGTCCAAGAGAATGGGGAGCTGGAATTTCCG TTAAGTGACAACAACATTAAAGCCGTCATCCTAGATGTATTTGTGGGAGGAAGCGATAGCACAAGTTCAGTAATTGAATGGGCCATGTCCGAAATGTTAC GAGACCCTCGAGTTTTGAAAAAGGCGCAACAAGAGGTTCGACAACACTCACATCTCTTTAATAAAGGGAAGAAGATTGTTGACGAAGCAAGCGTCGCCGA ACTGAAGTATTTAAAGTTGGTAATCAAAGAAGCTTTGAGATTACATCCGCCCGTACCATTATTGGTCCCAAGGGAAAATGTGGAGAGGTGTGAGATCGAT GGATACACTATACCTGCTCACACTAAGGTACTCATCAATGCTTGGGCTATAGGAAGGGATCCTAGATATTGGCCCGACCAACCAAACATGTTCTATCCCG AAAGGTTCCTTGATTCAAACATTGACTATAGGGGTTCGAGTTTTGAGTTTGTGCCCTTTGGTGCTGGAAGAAGGATGTGTCCTGGGATCACGTTCGGTAT AGCTAATGTGGAACTTGTTCTTGCTAATTTATTGTACCACTTCGATTGGAAATTGCCTGGTAGAAGAAAATTAGAAGAACTTGATATGACGGAAGCCTCT GGAATGACTGTGAACAGGAAAACCAATCTCTGCTTGGTGCCTGTTCCTTACAGTATCAATGCCTAG
AA sequence Show only first row Show all	>Lus10030924 pacid=23166873 polypeptide=Lus10030924 locus=Lus10030924.g ID=Lus10030924.BGIv1.0 annot-version=v1.0 MDEQIFLPIFLFSTALILAATAWKLKKGSSKSTNYNYYNNLPPGPPWKLPVIGHMLHLLGSQPHHRLRDLAKSYGPNLIFLQLGETRNVVVSSAESAREV MKTHDINFANRPVMLGGTIMGYDSTDVAFAPYGPYWRQLKKICTVELLSWKRVQSFRHVREEEVSRYVDKISSTAAAGGVIDLSKETRMYTSSVIARSAF GEECREAEEFMGLLKESTGVVGGFSVEDMFPSMTWLTVLLGVRSSMEKISRGLDKILDGIISEHKRRRRGRGHGDDDVEEKGDLVDILLKVQENGELEFP LSDNNIKAVILDVFVGGSDSTSSVIEWAMSEMLRDPRVLKKAQQEVRQHSHLFNKGKKIVDEASVAELKYLKLVIKEALRLHPPVPLLVPRENVERCEID GYTIPAHTKVLINAWAIGRDPRYWPDQPNMFYPERFLDSNIDYRGSSFEFVPFGAGRRMCPGITFGIANVELVLANLLYHFDWKLPGRRKLEELDMTEAS GMTVNRKTNLCLVPVPYSINA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10030924 [exp]	0	1
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	6.8	0.8098
AT5G22610			F-box/RNI-like/FBD-like domain...		Lus10027019 [exp]	8.0	0.8343
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10039775 [exp]	9.4	0.7638
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10002593 [exp]	12.4	0.8024
AT2G39010		PIP2E, PIP2;6	PLASMA MEMBRANE INTRINSIC PROT...		Lus10021475 [exp]	14.7	0.7866
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027989 [exp]	21.4	0.7262
AT4G37890		EDA40	embryo sac development arrest ...		Lus10039635 [exp]	23.3	0.6423
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10004202 [exp]	25.0	0.7748
					Lus10025897 [exp]	29.5	0.7966
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10023274 [exp]	32.5	0.7168

Compare expression of checked genes

Lus10030924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.