Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44590 134 / 7e-38 ADL1D DYNAMIN-like 1D (.1.2.3) AT3G60190 130 / 2e-36 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT5G42080 125 / 1e-35 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT1G14830 126 / 5e-35 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT3G61760 111 / 9e-30 ADL1B DYNAMIN-like 1B (.1) AT4G33650 72 / 9e-16 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT2G14120 69 / 1e-14 DRP3B dynamin related protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040117 [exp] 171 / 4e-51 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10023073 [exp] 127 / 2e-35 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10003873 [exp] 124 / 3e-34 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10019170 [exp] 119 / 2e-32 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10029001 [exp] 119 / 2e-32 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10019506 [exp] 115 / 3e-31 AT3G60190 1060 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10030255 [exp] 113 / 2e-30 AT3G61760 1052 / 0.0 DYNAMIN-like 1B (.1) Lus10001820 [exp] 112 / 4e-30 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10004007 [exp] 111 / 8e-30 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G147500 [exp] 136 / 9e-39 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.014G043600 [exp] 132 / 3e-37 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G135100 [exp] 129 / 2e-36 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.003G141000 [exp] 129 / 3e-36 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.001G090600 [exp] 128 / 7e-36 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.010G105900 [exp] 122 / 1e-33 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.002G171200 [exp] 117 / 7e-32 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.007G118300 [exp] 81 / 8e-19 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.017G041800 [exp] 78 / 4e-18 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.012G125300 [exp] 65 / 1e-13 AT2G14120 365 / 3e-121 dynamin related protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family
Representative CDS sequence Show only first row Show all	>Lus10030928 pacid=23166720 polypeptide=Lus10030928 locus=Lus10030928.g ID=Lus10030928.BGIv1.0 annot-version=v1.0 ATGTGCCGAGCGTCTTACGACGCGCTGCACGTTATAAGTGATGGGATCGTGACAAGGAGGCCTTTGGTACTGCAATTGTGCATGACAGAACCAGGGGTTG ATGACTATGCAGAGTTCCTTCATTTCCCTAAGAAGCGCTTCACGGATTTCTCTATGGTTCGCAAGGAGATTCAGGATGAAACTGATAAGATGACAGGAAC AAGAAGACATGTTTCTCCTAATCCTATTCACCTCACCATCTACTCTCCCAATGAGGGACAGCCTGACGGCATTGTTAGAGACATTGAGAATATGGTTCGT TCATATATTTCAAAGGTAACGGCAGACTGA
AA sequence Show only first row Show all	>Lus10030928 pacid=23166720 polypeptide=Lus10030928 locus=Lus10030928.g ID=Lus10030928.BGIv1.0 annot-version=v1.0 MCRASYDALHVISDGIVTRRPLVLQLCMTEPGVDDYAEFLHFPKKRFTDFSMVRKEIQDETDKMTGTRRHVSPNPIHLTIYSPNEGQPDGIVRDIENMVR SYISKVTAD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44590		ADL1D	DYNAMIN-like 1D (.1.2.3)		Lus10030928 [exp]	0	1
AT1G74710		ATICS1, SID2, E...	SALICYLIC ACID INDUCTION DEFIC...		Lus10023622 [exp]	3.7	0.8826
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10021037 [exp]	5.5	0.8576
AT5G27290			unknown protein		Lus10018966 [exp]	10.7	0.8776
AT4G26410			Uncharacterised conserved prot...		Lus10035249 [exp]	12.2	0.7964
AT2G04940			scramblase-related (.1)		Lus10004532 [exp]	14.1	0.8327
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10015165 [exp]	14.4	0.8734
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036099 [exp]	15.6	0.8500
AT4G15510			Photosystem II reaction center...		Lus10000352 [exp]	16.7	0.8702
AT5G25590			Protein of unknown function (D...		Lus10000014 [exp]	18.7	0.8317
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10017848 [exp]	21.3	0.7884

Compare expression of checked genes

Lus10030928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.