Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38740 222 / 5e-74 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040116 [exp] 298 / 4e-104 AT2G38740 347 / 3e-122 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10003018 [exp] 251 / 9e-85 AT2G38740 355 / 1e-124 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10028605 [exp] 43 / 6e-05 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018906 [exp] 42 / 0.0001 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G147300 [exp] 230 / 6e-77 AT2G38740 360 / 5e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G086900 [exp] 229 / 8e-77 AT2G38740 359 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G147400 [exp] 212 / 6e-70 AT2G38740 350 / 2e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G043500 [exp] 194 / 3e-62 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G135000 [exp] 115 / 1e-32 AT2G38740 176 / 4e-55 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10030930 pacid=23166742 polypeptide=Lus10030930 locus=Lus10030930.g ID=Lus10030930.BGIv1.0 annot-version=v1.0 ATGACCGATTCTAGCACTTCTCTCACCAGATGTGTTCCGATTGAAGCTGTACTCTTCGATGTCGATGGAACTCTTTGTGATACGGATCCAATCCATCATC GTGCCTTTGTTCAACTGCTTCAAGAGATCAACTACAACAATGGAGTTCCCATAACTGAGGAATTCTTCATCAAGAACATTGCTGGCAAGCACAATGAGGA GATCGCGCAAGTCTTGTTCCCTGACGATTTACCTCGAGGCATAAAGTTCACTATAGACAAGGAAGCACTTTTCCGGAAATTAGCAGCTGAGCACATTCCC GCGGTAGAGGGCCTGTACAAAGTGACCAAGTGGATCGAAGATCATGGCTTGAAACGTGCTGCAGTCACCAATGCTCCGAAACCAAATGCTGAACTCATGA TCTCAAAGCTCGGGCTGACAGATTTCTTCCAAGCTGTCATCGTACAAAGTGACCAAGTGGATCGAAGATCGTGGCTTGAAACGTGCTGCAGTGACCAACG CTCCGAAACTAAATGCTGA
AA sequence Show only first row Show all	>Lus10030930 pacid=23166742 polypeptide=Lus10030930 locus=Lus10030930.g ID=Lus10030930.BGIv1.0 annot-version=v1.0 MTDSSTSLTRCVPIEAVLFDVDGTLCDTDPIHHRAFVQLLQEINYNNGVPITEEFFIKNIAGKHNEEIAQVLFPDDLPRGIKFTIDKEALFRKLAAEHIP AVEGLYKVTKWIEDHGLKRAAVTNAPKPNAELMISKLGLTDFFQAVIVQSDQVDRRSWLETCCSDQRSETKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10030930 [exp]	0	1
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10042593 [exp]	14.7	0.9331
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	20.0	0.9330
AT2G42360			RING/U-box superfamily protein...		Lus10005105 [exp]	24.7	0.9314
AT2G38870			Serine protease inhibitor, pot...		Lus10018783 [exp]	28.1	0.9265
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016178 [exp]	30.7	0.9205
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10024883 [exp]	31.8	0.9163
AT2G38870			Serine protease inhibitor, pot...		Lus10018786 [exp]	32.0	0.9280
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10034626 [exp]	37.8	0.9277
AT2G42350			RING/U-box superfamily protein...		Lus10005104 [exp]	39.5	0.9205
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10004191 [exp]	42.9	0.9237

Compare expression of checked genes

Lus10030930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.