Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17030 183 / 2e-57 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT4G38400 160 / 3e-48 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45970 154 / 1e-45 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT3G45960 150 / 2e-44 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT1G65681 116 / 1e-31 EXPB6 beta expansin 6 (.1) AT1G65680 112 / 2e-29 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT2G20750 108 / 5e-28 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT4G28250 103 / 2e-26 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT2G45110 103 / 3e-26 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT3G60570 85 / 2e-19 ATHEXPBETA1.3, ATEXPB5 expansin B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040115 [exp] 395 / 2e-139 AT4G17030 123 / 4e-33 expansin-like B1 (.1) Lus10001244 [exp] 374 / 1e-131 AT4G17030 153 / 3e-45 expansin-like B1 (.1) Lus10042095 [exp] 356 / 3e-124 AT4G17030 139 / 3e-39 expansin-like B1 (.1) Lus10011013 [exp] 213 / 4e-69 AT4G17030 302 / 2e-104 expansin-like B1 (.1) Lus10001009 [exp] 209 / 4e-67 AT4G17030 308 / 2e-106 expansin-like B1 (.1) Lus10000958 [exp] 205 / 8e-66 AT4G17030 303 / 1e-104 expansin-like B1 (.1) Lus10003336 [exp] 201 / 4e-64 AT3G45970 320 / 6e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10022639 [exp] 199 / 2e-63 AT3G45970 321 / 3e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10011012 [exp] 197 / 1e-62 AT4G17030 219 / 2e-71 expansin-like B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G087000 [exp] 434 / 3e-156 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.001G147200 [exp] 410 / 7e-147 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.003G083200 [exp] 221 / 4e-72 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G151500 [exp] 214 / 3e-69 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.004G181700 [exp] 186 / 3e-58 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.009G141400 [exp] 185 / 8e-58 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.014G066300 [exp] 115 / 1e-30 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.013G134300 [exp] 114 / 2e-30 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.019G101900 [exp] 110 / 6e-29 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.010G202500 [exp] 89 / 5e-21 AT2G39700 473 / 2e-171 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10030931 pacid=23166817 polypeptide=Lus10030931 locus=Lus10030931.g ID=Lus10030931.BGIv1.0 annot-version=v1.0 ATGGCTCTCTCCTCCATTCAATCCCTCGTCTGCCTACTTGCAGTTGTGCTGTTCATGCGGAACCTGCAGACACATGCAGCAACATGCAAAGACTGTTTCA TTCACTCTCGAGCTGCCCACTACCCGAATTCTGATGAACAAGGAACAGAGAATGGCGCCTGCGGATTTGGTACATTTGGGGCAACTTTAAACGGTGGAGA TGTATCAGCTGCTTCGGAGCTCTATCGTAATGGTCTTGGATGTGGTGCTTGCTATCAGGTGAGATGCACCAATAGCAACTATTGCTCAGACAAAGGAGTA AACATCGTTATAACTGACCAAGGTTCGAGTGATAACACCGACTTCATTCTCAGCAGACGGGCCTTCGGTGGAATGGCTCAGACCAAGGATGCAGCTGCCT CGATACTAGCCCTTGGAATCGTCGACATCGAATATAGACGTGTTTCATGCTACCATCCATACAAGAATATAACGATCAAGATTGACGAGAACAGCAACTA CCCGTATTACCTTGCTTTTGTCATACGGTACCAACAAGGGGAAAAGGATATTACTGCCGTTCAGCTCTGTGAGACACAAAACTTTAAATGCAAGCTTCTG GAGAGGAGCTACGGAGCTGTGTGGACTACTACCTCCCCTCCCAGTGGCCCACTGTCCCTAAGGATGTTATTCAGCGATGATGATGGAGACGAGTCATGGG TTGTTCCTGTTAACAATATACCTAGTGACTGGAAAGCAGGAGAAACATATGACACGGGAGTACAAGTTGATGTTTAG
AA sequence Show only first row Show all	>Lus10030931 pacid=23166817 polypeptide=Lus10030931 locus=Lus10030931.g ID=Lus10030931.BGIv1.0 annot-version=v1.0 MALSSIQSLVCLLAVVLFMRNLQTHAATCKDCFIHSRAAHYPNSDEQGTENGACGFGTFGATLNGGDVSAASELYRNGLGCGACYQVRCTNSNYCSDKGV NIVITDQGSSDNTDFILSRRAFGGMAQTKDAAASILALGIVDIEYRRVSCYHPYKNITIKIDENSNYPYYLAFVIRYQQGEKDITAVQLCETQNFKCKLL ERSYGAVWTTTSPPSGPLSLRMLFSDDDGDESWVVPVNNIPSDWKAGETYDTGVQVDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10030931 [exp]	0	1
AT1G21326			VQ motif-containing protein (....		Lus10012286 [exp]	1.0	0.9969
AT1G17860			Kunitz family trypsin and prot...		Lus10026357 [exp]	2.4	0.9931
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10007235 [exp]	2.8	0.9865
AT1G17860			Kunitz family trypsin and prot...		Lus10039163 [exp]	3.0	0.9915
AT1G17860			Kunitz family trypsin and prot...		Lus10042301 [exp]	4.2	0.9873
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10042593 [exp]	4.6	0.9872
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10024120 [exp]	6.6	0.9908
					Lus10043316 [exp]	7.1	0.9907
AT1G11925			Stigma-specific Stig1 family p...		Lus10020831 [exp]	10.8	0.9854
AT5G09360		LAC14	laccase 14 (.1)		Lus10006157 [exp]	11.0	0.9834

Compare expression of checked genes

Lus10030931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.