Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29230 318 / 4e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18840 308 / 9e-97 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G08070 306 / 2e-94 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G45350 296 / 8e-92 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15930 290 / 1e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 287 / 2e-87 MEF22 mitochondrial editing factor 22 (.1) AT4G02750 285 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15300 277 / 4e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 281 / 1e-84 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G38010 276 / 1e-84 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030053 [exp] 332 / 5e-104 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 313 / 8e-97 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003422 [exp] 309 / 1e-96 AT2G44880 679 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10019797 [exp] 299 / 1e-92 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 297 / 7e-92 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021069 [exp] 292 / 3e-91 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021068 [exp] 292 / 3e-91 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017243 [exp] 292 / 5e-91 AT1G13410 539 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 286 / 4e-87 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G087100 [exp] 732 / 0 AT3G29230 368 / 1e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 335 / 3e-105 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G106500 [exp] 326 / 3e-103 AT2G29760 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 317 / 1e-100 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G046200 [exp] 318 / 2e-100 AT2G44880 676 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G125500 [exp] 312 / 8e-98 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 314 / 4e-97 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 306 / 4e-95 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G207500 [exp] 303 / 9e-95 AT5G37570 602 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G011000 [exp] 305 / 2e-93 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030932 pacid=23166735 polypeptide=Lus10030932 locus=Lus10030932.g ID=Lus10030932.BGIv1.0 annot-version=v1.0 ATGTCCCGCAACTTCAAATTAAAAACTTCCGCATCCTCTCTTTACCTTGACAAGTTCATCAAATCACAACGAAACATCTCTAAACCATCGCCGCGTCTCT TCCCCGCCGACCATCCCAAACCCCAATGCCGACCAACAAATTCCCTCCACCAGAGCGTACCCTCATCAACTGTGCTGGACATTAGCCATTACCTTCTGCA GAAGCTAGACCAATCATGTCCTCACATCCAACATTTCCATCAAATCCACTCTCAGCTACTCCTTCGCGGCCTCTTTCAGCACCCGCTTCACGCCGGTCGC TGCGTCAAGAAGCTCTGCACCGAATTAAATTCCATCTCTTACTGTGTCTACCTGTACGGCTACGTCGACGAACCCGACGCGTTTATGTGCAATACGATAA TGAGGAGCTTCTTGGATTCGTGCAACGCATTTGGTGCTTTGACGTTCTACTATCAGGGTATGGTTGGTAAATGTGTTTCGCCTAATCATTATACTATCCC GCTGGTTGCTAAGGTTTGTTGTGAGATTGGGTCAGTTGTTCAAGGGCGGAAGGCTCATGCTAGGGTGTTTAAGCTCGGGTTTGAGTCGGATTTGTTCGTT AAGAACGCTTTTATTCGGCTGTACTCTGTTTGTGGTGGGACTAAGGATGCTTGTAACTTGTTTGATAGTGGGTACGTGTTGGATTTGGTGAGTTGGAATT CTATGATTGATGGGTATGTGAAGAATGGCCAGGTCGGAGTTGCTCGCGAACTGTTCGATGAAATGTTTGACAGAGATGTCGTTAGTTGGAACTCGATGAT TTCAGGGTATGTTTCAGTTGGGGATATGGATGAAGCTAGAGGGTTGTTTGATAGAATGCCATGTAGGGATGTTGTGTCTTGGAACTGTATGATTGAGGGA TATGCGAGGGTGAAGAACGTTAATCTGGCTCGCGCCTTTTTCGATGAGATGCCAAGCAGAAATGCGGTTTCGTGGAACGTGATGTTGGCTCTTTACTTAA GGCGCAAGGACTATGGTGAGTGTTTGAAATTGTCTGACAAGATGGTAGAACTGGGAGTGAAGCCGAATGAGGCTTCTCTTGTGAGTATTTTGATAGCATC TGCTAATTTCAGGAGACTTGATCGAGGAAAATGGGTTCATTCTTATATTCGAGATAATGGAATTGAAACTGATGCATTGCTATCAACTGCTCTCTTGACA ATGTATGTAAAATGTGGAGTTATGGACACGGCTAGAGAGATATTTGATCAGATGCTGGACAAATCTGTTGTCTCGTGGAACTGTATGATCATGGGATATG GTATGCATGTTCAAGGAGAGAGAGCCCTAGAGATTTTCCTGGAGATGGAGAAGGCTGGTTATGTTCCTAATAGTGCTACTTTCGTGAGCATTTTATCTGC GTGCTCTAAGTCCAAAATGATCTTAGAAGGTTGGTGGTACTTTCGTGTAATGCTTCAAAGGTACAAAATCAGACCAACAGGAAAACACCAAGGATGCATG GTTGATCTCCTTGGTCGGGCTGGTTTGATGGATCAAGCTGAAGCACTCGTAAAGAAGAAGCATACAGAAGGAGAACCTAGGTTTCTGAGGGCTAATCATT TTAACTGCTCTAGATATTTTATGTTGGAGCTTGGGGAGATGATAGCCAAACAGCAAATAACATCATATCCAGAGGATATTACACCATACCTTTTGCTATT GTTCATATATATTGTGGAAAGGAAATGGGATCACATAGATGACGTGAGATATCTGATCATTGAGAAGTTTGGGAAAAAAGATTGTTCTAGTCATCAACTC GGGGACGGGGAGTCTGGATTTGACGTTTCTCTGGGAAGATGTTCGCCCCATAAGAAAAGCATGGCATACTCAATGTTGGATGAGATAAGTGCTTGTATAA GGTTGCTTTATACAGAGTCTTCAGGACATGAAAACAGTAAATGA
AA sequence Show only first row Show all	>Lus10030932 pacid=23166735 polypeptide=Lus10030932 locus=Lus10030932.g ID=Lus10030932.BGIv1.0 annot-version=v1.0 MSRNFKLKTSASSLYLDKFIKSQRNISKPSPRLFPADHPKPQCRPTNSLHQSVPSSTVLDISHYLLQKLDQSCPHIQHFHQIHSQLLLRGLFQHPLHAGR CVKKLCTELNSISYCVYLYGYVDEPDAFMCNTIMRSFLDSCNAFGALTFYYQGMVGKCVSPNHYTIPLVAKVCCEIGSVVQGRKAHARVFKLGFESDLFV KNAFIRLYSVCGGTKDACNLFDSGYVLDLVSWNSMIDGYVKNGQVGVARELFDEMFDRDVVSWNSMISGYVSVGDMDEARGLFDRMPCRDVVSWNCMIEG YARVKNVNLARAFFDEMPSRNAVSWNVMLALYLRRKDYGECLKLSDKMVELGVKPNEASLVSILIASANFRRLDRGKWVHSYIRDNGIETDALLSTALLT MYVKCGVMDTAREIFDQMLDKSVVSWNCMIMGYGMHVQGERALEIFLEMEKAGYVPNSATFVSILSACSKSKMILEGWWYFRVMLQRYKIRPTGKHQGCM VDLLGRAGLMDQAEALVKKKHTEGEPRFLRANHFNCSRYFMLELGEMIAKQQITSYPEDITPYLLLLFIYIVERKWDHIDDVRYLIIEKFGKKDCSSHQL GDGESGFDVSLGRCSPHKKSMAYSMLDEISACIRLLYTESSGHENSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10030932 [exp]	0	1
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10023710 [exp]	1.4	0.9115
AT1G56690			Pentatricopeptide repeat (PPR)...		Lus10013149 [exp]	2.2	0.8982
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10012890 [exp]	2.4	0.9061
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005877 [exp]	2.6	0.8858
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10023592 [exp]	2.8	0.8986
AT2G37310			Pentatricopeptide repeat (PPR)...		Lus10025273 [exp]	4.2	0.9002
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10016390 [exp]	5.7	0.8615
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	6.3	0.8829
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10032172 [exp]	6.5	0.8519
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10030542 [exp]	6.5	0.8914

Compare expression of checked genes

Lus10030932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.