Plant FIBer expression Database

Lus10030933 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67370 625 / 0 ASY1, ATASY1 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
AT4G32200 229 / 3e-64 ASY2 DNA-binding HORMA family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040113
[exp]
949 / 0 AT1G67370 626 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
Lus10015786
[exp]
698 / 0 AT1G67370 600 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
Lus10037019
[exp]
694 / 0 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G173200
[exp]
720 / 0 AT1G67370 746 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
Potri.001G055201
[exp]
667 / 0 AT1G67370 700 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0651 Mad2 PF02301 HORMA HORMA domain
Representative CDS sequence
>Lus10030933 pacid=23166761 polypeptide=Lus10030933 locus=Lus10030933.g ID=Lus10030933.BGIv1.0 annot-version=v1.0
ATGGTTAGCTCAGAGAATCTCTGTTCGATTGATCAGTCATATTGTTTTCTTCACGTAAACAGTATCCGTTTACTGAAATTGCTCAAGCTCGTCAGCTTAC
TTCGGTTCTTCGATTTCCTGTTTCAGGTGGTCGCTCAGAAGGTGAAAGAAGCGGAGATCACTGAGCAGGATTCGCTTCTCCTGACTAGAAACCTACTGCG
GATTGCAATATTTAATATCAGCTACATAAGAGGTCTGTTTCCGGAGAAATATTTCACGGACAAGAATGTTCCTGCATTAGAGATGAAGATCAAGAAGCTC
ATGCCTCTTGATGCAGAATCGCGTCGACTGATTGACTGGATGGAGAAAGGTGTCTATGATGCATTGCAGAAGAAGTACCTTAAGATGCTTATGTTCTGCG
TGTGTGAGGCAATAGACGGACCTATGATTGAGGAATATGCATTTTCCTTTAGTTACTCTGATTCAGATAGTCAAGAGGTATCAATGAACTTTAACCGCAT
TGGAAACAAGTCAAAGGGAGGAACCTTCAAGTGTAACTCCATGACAGAGATTACTCCCAATCAGATGAGGAGTTCAGCTTGTAAAATGGTTCGTACGCTT
GTTCAGCTGATGAGAACTCTAGACAAGATTCCTGAGGAGCGCACTATACTGATGAAACTCCTCTACTATGATGATGTCACGCCTGCAGAGTATGAACCAC
CATTCTTCAAAGGGTGCTCAGAAGAAGCACCTAATCCATGGACTAAAAGTCCATTGAAGATGGAGGTTGGCAATGTCAACAGCAAACATTTCGTGTTGGC
TCTCAAGGTGAAAAGTGTGCTTGATCCATCTGACGATGAAAATGGGGACATGGACGATAATGACGAGAGCTTAGGAGCGGATTCTGATGGAATATACGAT
TCGTCTGATTGTGATACCGAGGTTAACCAATCACAAGTAGACCGATATAGAGTAGCACCAGCTGGAAAGCAACAACAGGAAACAGATACTTGCATGGTCA
ATGAAGGTTGCAAAGATGATACACAGAATCCAGAAGAAGATGGGCAAGAACTGGCTAGGGTGAAGGAGTGGATTGATAGTTTACACCGCGACACAATTGA
ACTGACTGATATTTTCTCCAACTTCACTGATATCTCAGTGGCTCTTACTGAAGAAATCGTTGAAAAGCTCGTCCAAGAAGATGTTTTAACCGGAGCTGGA
GCAGATGTTTACATTATAAACAAGCAGAGGGTATCTTATTATGACTTCAATACGGTTAAAGAGGAAAAGGAATGCAAGATGGCAGCCTCTGCGGAGAAAA
CTCCACGAGTGGATGACCACTTGTATATGAAGGCTTTGTACCATGTGCTCCCAATGGCCTGCGTGACGACCCCACAGCTTCAGGGTAAACTAGGCGGAGA
AGCCAGTCTGACTACAGTGCGTAAACTTATGAATAGGATGACCAAGGATGGTTACCTTGAAGCCCAAGGCAACCGCAGACTAGGAAAGCGTGTGATCCAC
TCAGTGACGACGGAGAAAAAGCTTCTGGAAGTCAAGAGAGCCCTTCAAAATGATTCTATGGACCAGAGGGATAATAACTCAACATGTGGAGTTGTGCAAT
CCGTAGGCTCAGATCTTAGTCGCATGAAGCTTACATCAGAATTAAATGGGAATGGATCAATCAGGACCGATCTGGTTGTCTGGGAACATGGAAACACTCC
AACTAGTAGGGCTGAGCCTGTTGCTTCGAGAGAAAGTTTCACCCCAGGGTTTGGAAACGAGGGAACCATTATCTGCCGCAGAGCTACTGAGGACAAGAAG
GCCAGGAAAGCCAGCAGGGTAATAGCTTAG
AA sequence
>Lus10030933 pacid=23166761 polypeptide=Lus10030933 locus=Lus10030933.g ID=Lus10030933.BGIv1.0 annot-version=v1.0
MVSSENLCSIDQSYCFLHVNSIRLLKLLKLVSLLRFFDFLFQVVAQKVKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPEKYFTDKNVPALEMKIKKL
MPLDAESRRLIDWMEKGVYDALQKKYLKMLMFCVCEAIDGPMIEEYAFSFSYSDSDSQEVSMNFNRIGNKSKGGTFKCNSMTEITPNQMRSSACKMVRTL
VQLMRTLDKIPEERTILMKLLYYDDVTPAEYEPPFFKGCSEEAPNPWTKSPLKMEVGNVNSKHFVLALKVKSVLDPSDDENGDMDDNDESLGADSDGIYD
SSDCDTEVNQSQVDRYRVAPAGKQQQETDTCMVNEGCKDDTQNPEEDGQELARVKEWIDSLHRDTIELTDIFSNFTDISVALTEEIVEKLVQEDVLTGAG
ADVYIINKQRVSYYDFNTVKEEKECKMAASAEKTPRVDDHLYMKALYHVLPMACVTTPQLQGKLGGEASLTTVRKLMNRMTKDGYLEAQGNRRLGKRVIH
SVTTEKKLLEVKRALQNDSMDQRDNNSTCGVVQSVGSDLSRMKLTSELNGNGSIRTDLVVWEHGNTPTSRAEPVASRESFTPGFGNEGTIICRRATEDKK
ARKASRVIA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67370 ASY1, ATASY1 ASYNAPTIC 1, DNA-binding HORMA... Lus10030933
[exp]
0 1
AT1G66150 TMK1 transmembrane kinase 1 (.1) Lus10034432
[exp]
27.9 0.7081
AT3G47630 unknown protein Lus10023590
[exp]
45.4 0.7677
AT4G00440 Protein of unknown function (D... Lus10017797
[exp]
46.0 0.7668
AT4G23660 ATPPT1 polyprenyltransferase 1 (.1.2.... Lus10033224
[exp]
75.5 0.7699
Lus10011277
[exp]
84.9 0.7647
AT5G66390 Peroxidase superfamily protein... Lus10041784
[exp]
94.3 0.7554
AT3G63520 ATNCED1, ATCCD1... carotenoid cleavage dioxygenas... Lus10016410
[exp]
94.4 0.7491
AT3G52970 CYP76G1 "cytochrome P450, family 76, s... Lus10021136
[exp]
124.5 0.7306
AT4G05220 Late embryogenesis abundant (L... Lus10018376
[exp]
149.5 0.7242
AT2G42700 unknown protein Lus10033605
[exp]
167.9 0.7382

Lus10030933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.