Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 337 / 2e-114 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G25300 326 / 3e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G25310 318 / 4e-107 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 310 / 6e-104 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 303 / 3e-101 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 294 / 8e-98 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 241 / 2e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G38240 237 / 1e-75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 235 / 1e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 227 / 2e-71 ATJRG21 jasmonate-regulated gene 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040112 [exp] 702 / 0 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1) Lus10030995 [exp] 575 / 0 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10030941 [exp] 466 / 6e-166 AT1G17010 258 / 2e-84 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022292 [exp] 351 / 7e-120 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10011985 [exp] 322 / 2e-108 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10032574 [exp] 321 / 6e-108 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10026173 [exp] 319 / 3e-107 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10011980 [exp] 296 / 1e-98 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011979 [exp] 293 / 5e-97 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382400 [exp] 357 / 2e-122 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G381700 [exp] 332 / 2e-112 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.009G025900 [exp] 322 / 2e-108 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G355100 [exp] 321 / 3e-108 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.009G022800 [exp] 305 / 6e-102 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G201000 [exp] 288 / 2e-95 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 275 / 3e-90 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G355200 [exp] 273 / 3e-89 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.010G200900 [exp] 270 / 3e-88 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 248 / 7e-80 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10030934 pacid=23166708 polypeptide=Lus10030934 locus=Lus10030934.g ID=Lus10030934.BGIv1.0 annot-version=v1.0 ATGGAGACCAAGAAGCTAACATTTGATTTCGGTGGCTCGATTGCTGTCGCCAATGTCCAACAACTTGCTTCAATCTCCGACGTCGACGTACCCATCAGAT ACATCCGCCCTGAACTCGAGCTTGATCAAGTTTGCATAAACAATGACGGGTCTCACCAGATCCCGGTCATCGACATGACCAAGCTAGATGCTGGTGATGA AGACGAATCAGCAAAGCTCCATTCCGCTTGCAGAGACTGGGGATTCTTCCAGGTGATCAACCATGGCGTCACACAAGAAGTAATACAGAAAATGCACCTA GATGTCCAGGAGTTCTTCAACCAGCCGCTGCAGGAAAAGATGTCGTGTGCCCAGTTGCCAAACAGCCTCGAAGGATATGGCCAGGCGTTTGTCGTATCGG AAGAGCAGAAGCTTGATTGGGGTGACATGCTCTTCATAATTCCCCAGCCTGTTAGTGGAAGAAGCATGAGGTTTTGGCCCACAGTTCCCTCTTCATTCAG GGCCAGTTTGGAACAGTACTCGTCAGAGCTGCAAAAACTGGCGTCGAGTCTGATGACTTGCATGGCAAGGAACCTAGGAGTTGAGCCAGAGAAGGTGCTA GCATTGTTCGAAGAAGGAATACAAGGTGTAAGAATGAACTACTACCCACCTTGTAAGGAGGCAAACAAAGTTATAGGTCTCACACCGCATTCCGACACTA CTGGGTTGACATTGCTAACTCAAGTCAACGATGTTCAAGGACTACAAATCAGGAGAGATGAGAAATGGGTTCCCATTGTTCCGATTCCGGGTGCATTCGT CGTCAATGTTGGCGACATCATTGAGATAATGAGCAACGGGGAGTACAAAAGCATAGAGCACAGAGCAGTGGTGAATCCTGATAAGGAGAGGATGTCGATT GCAGCATTTCACAGTCCAAATATGAATGCCATGATTGGACCTTTGGAAGAGACCATATTGAAGGAAGAAATGAAGCTAGCCAAGTACAAGACGATATGGC AAGACGAGTTGATGAAGATTATCGTGAACACCAAGCTCGATGGAAAATCACTCCTTTCTCGGCTGAAGATCGCACAAGAGTGA
AA sequence Show only first row Show all	>Lus10030934 pacid=23166708 polypeptide=Lus10030934 locus=Lus10030934.g ID=Lus10030934.BGIv1.0 annot-version=v1.0 METKKLTFDFGGSIAVANVQQLASISDVDVPIRYIRPELELDQVCINNDGSHQIPVIDMTKLDAGDEDESAKLHSACRDWGFFQVINHGVTQEVIQKMHL DVQEFFNQPLQEKMSCAQLPNSLEGYGQAFVVSEEQKLDWGDMLFIIPQPVSGRSMRFWPTVPSSFRASLEQYSSELQKLASSLMTCMARNLGVEPEKVL ALFEEGIQGVRMNYYPPCKEANKVIGLTPHSDTTGLTLLTQVNDVQGLQIRRDEKWVPIVPIPGAFVVNVGDIIEIMSNGEYKSIEHRAVVNPDKERMSI AAFHSPNMNAMIGPLEETILKEEMKLAKYKTIWQDELMKIIVNTKLDGKSLLSRLKIAQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10030934 [exp]	0	1
AT5G26730			Fasciclin-like arabinogalactan...		Lus10006371 [exp]	4.0	0.7190
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10024661 [exp]	9.4	0.7784
AT1G01440			Protein of unknown function (D...		Lus10001910 [exp]	13.6	0.7693
AT5G67140			F-box/RNI-like superfamily pro...		Lus10024178 [exp]	17.9	0.7439
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10038560 [exp]	19.0	0.7425
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039494 [exp]	19.6	0.7423
AT5G06440			unknown protein		Lus10016186 [exp]	24.7	0.7503
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040327 [exp]	26.0	0.7493
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10004664 [exp]	28.0	0.7393
AT5G38460			ALG6, ALG8 glycosyltransferase...		Lus10033554 [exp]	34.8	0.6142

Compare expression of checked genes

Lus10030934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.