Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21700 443 / 6e-140 Protein of unknown function (DUF2921) (.1) AT1G52780 134 / 9e-32 Protein of unknown function (DUF2921) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005493 [exp] 449 / 4e-142 AT4G21700 625 / 0.0 Protein of unknown function (DUF2921) (.1) Lus10006025 [exp] 444 / 2e-140 AT4G21700 627 / 0.0 Protein of unknown function (DUF2921) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G087400 [exp] 689 / 0 AT4G21700 607 / 0.0 Protein of unknown function (DUF2921) (.1) Potri.011G052500 [exp] 455 / 1e-144 AT4G21700 638 / 0.0 Protein of unknown function (DUF2921) (.1) Potri.001G175600 [exp] 130 / 2e-30 AT1G52780 1107 / 0.0 Protein of unknown function (DUF2921) (.1) Potri.006G187000 [exp] 71 / 3e-12 AT1G52780 424 / 4e-131 Protein of unknown function (DUF2921) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11145 [flax] [poplar] DUF2921 Protein of unknown function (DUF2921)
Representative CDS sequence Show only first row Show all	>Lus10030937 pacid=23166705 polypeptide=Lus10030937 locus=Lus10030937.g ID=Lus10030937.BGIv1.0 annot-version=v1.0 ATGGCTGAATTTCCATCTCCTCCGATCTTCTTTCTCCTTCAAGCTTCCATCTTTCTGCTCCTTTCAGTCTCTTCTGCTACTGCTTCTTCCTCCAAACCCA TTTCCTATGAACAACAGTGCAGCTCAATGGTTCCAACTTCAAACCCAACTGATCCTGAGACCATTTCAGTCCCTTTCCAACCAAACCAAGCCGGATACTA CATGGGAGGGGATGGCTTTTCCAACTTCACAAACTCATCTTACTATACCCAATACGCAGGACCGGGAGGCAGCTATACCTTTCTCTTCAGAACCCACCAC GTCCACAAAACAGATGCTGACACCGTTTACAAGGTGGAGGCCGATTTCGTCATCCAAAACGGAAGAATGGGTTATTATCACAGAGATTCCACCTACTACA GCCATGTTCTTATTAATGGGGTTAGGAAAGATCCTCTAACCTTTAAGTTTGAAGGGTTCTGGTCACCCAGTAGTGGGAAGCTCTGTATGGTTGGTTCTGC TCTCGTCGACGATGATGAGATCCACAATGGAAAAACCGATTATCGTCATCTTGATGGGGTTCTCAAGCTGTTTAATGTCTGGAGTACTAGCAACCTCACT AGTTTGATCACTGGAACATTGGAGAGCTTGAGTTCTGTTGACCACTGGAGCTACTTCAAGCCAGTCTCCATGCTGATTCTCCCCGAAATAAATTATCAGT ACAACAAGCATGGTAGTGGTGGTGGTGCAGGCTGTGAGGCTGAATCCAAGGCTGCTCTTCCTAAAGATAAGTCTCTCAGTTTGCCACTCAGTACGTCTAT TTGTTCTCCCTTCCACAGTTACTCAGCCTCATTAATCCGTCTTGAATATGCAAAGAGCTGCATAAATTCTTCTTCTTCTACTACTGCTGCTGCTAAGAAA TGCAGCCCGTTGGGGAACGATGTCGATGATCACTTGCCGAGTTTCATGTCCTTGAGCGCCTTTCAGTGCTCCAACGACAAACAAAGTCTAAGGTTTCGGA TCGAGTTTCCAAACAGCAGCTACCTTGACTACTACAGTGCTTTGACTTTCTCCCCCAACACAACCCTTGTTTCGGAAGGGACATGGGATGCTAAGAACAA CAGGTTGTGCATTGTAGCTTGCAGAATCCGGAATGTGACAGAAGATGGCTCCTTCAATTCCTCTTGGCAGATAACTGATTGCTCAATCAGGATGAGCTTA AGGTTTCCCTCCACTTGGTCGATTGGAAACACTAACAACTTGGTTGGAGAGATTTGGAGCAGCTTAGATGCAGAGGACTCTGCCTATTTCAACAGAATCA CGGTGAAGGATTTTGACATCTATGGCCATCAAAGATCAGCAGGGATTCCAGGCCTGAAGTATGAGTACACCATGGCTGAGAAAGCTAACAGATCCTGTCC AAAGGTGGACAAGCCATATACTGGTGATAAGTCTAAGCAGTTTCCAGATGGAAGGTCTGAAGAAATGAGGTTCGACATGTCGCTTAAAGACTTTGGGAAT AGAAAGGTCGGATGGGCGAGAGCTGAGGCAATCTTTGTTGGCGATGAAGTTCCTGCCGGGAATCTTAATGGTGGGATCAATGTTATAACCAGCTCCTCTG AAGTTCCTGCAAAACCAAAGACTCCAAGTAAACCGGTGAACATCAGCTATAGCATCAAATACACACCATTCAATGTATCAACAGATGGAAATGGGTTTTC TATCTCTGCTGAAGGAGTTTACAAAGCTGAAACAGGATACCTCTGTATGGTTGGCTGCAAGTATGCTTCTTCTTCTTCTTCTAATGATTTTTCTAGGAAC ATAACTGAAGAACTAGCCGACCTTGATTCAAAGGATTGTGAAATACTTATCAAGATCGAGTTCCCCTCGGTAGATTCAAAGGAATACATTCAAGGAAGCA TCGAAAGCATGAGGAAGGAATCCGATTCTTTGTACTTCAAAACTCTCACTTTCACCGCATATTCCTTCTACGGCCGCAGGGGAAGAGAAACCGCATGGAG AATGGATTTGGAGGTCGTCATGTCTCTAGTCTCCAACACTCTCTTATGTTTCTTCGTGGCACACCAGATATTTCATGTCAAGAGGAACCCTGAAGTGTTT CCTTTCTTATCCATCCTTATGCTTCTAGTACTCACCCTTGGCAGCTTGATCCCCCTAGTACTAAACTTCGAAGCGTTGTTTTCGCCCAAGCAAGACCCGA ATGGATTCTACTACATGAGAAGTAACGCAGTAAGGCTAGAAGTAGACGAGGTGATTTTGAGGGTTATCACCATGATGGCTCTTCTGCTCCAACTCCGTCT TCTCCAGCTTGCTTGGCTTGCACGTCAAGCAAACAAAGACAACCAGGCCTCGAGGTCCGCCGAGAAGAAGACACTCCTCATAGCTCTACCTCTATACATT GCAGGCGCTCTCATTTCCCTGTATTTCAACTGGAAACATTACGAATTCGGGACCAGTGGGACGAGGAGTTCGTCGAGGTTTCGATCTAGCCAGCAGCATT CACTCTGGACGGACTTGAGGACATATGCTGGTCTAGTACTCGACGGTTTCCTTCTCCCTCAAATCCTGCTCAACATTTTCCACAACCCGGCCCCAAAGAC ACCGGTCCTTTCGAGTGTTTTCCTCATCGGAACAACGCTAGGCCGGCTAGCCCCTCATGGATATGACCTCTTCAGGGCTAAGAACTATGTGGACTACTTC ACTTGGTCATACATCTATGCCAACCCTGATGCGGATTACTACTCAACAGCTAGTGACGTGGTAATTCCTCTGCTGTGCTTGGGGTTTGCTGTGACCGTAC ACTATCAGCAGCGGCTCGGAGGGCGTTGCTTTTTCCCCAAGAGGTTTAGGAAGGTAGAAGATGTGTACCAGAAGGTGGCTGCCACTGATGATGAAGAGTT GGAGGGGGATTCTCATGTCGTTGGCCATCTTCCATCTGTTTGA
AA sequence Show only first row Show all	>Lus10030937 pacid=23166705 polypeptide=Lus10030937 locus=Lus10030937.g ID=Lus10030937.BGIv1.0 annot-version=v1.0 MAEFPSPPIFFLLQASIFLLLSVSSATASSSKPISYEQQCSSMVPTSNPTDPETISVPFQPNQAGYYMGGDGFSNFTNSSYYTQYAGPGGSYTFLFRTHH VHKTDADTVYKVEADFVIQNGRMGYYHRDSTYYSHVLINGVRKDPLTFKFEGFWSPSSGKLCMVGSALVDDDEIHNGKTDYRHLDGVLKLFNVWSTSNLT SLITGTLESLSSVDHWSYFKPVSMLILPEINYQYNKHGSGGGAGCEAESKAALPKDKSLSLPLSTSICSPFHSYSASLIRLEYAKSCINSSSSTTAAAKK CSPLGNDVDDHLPSFMSLSAFQCSNDKQSLRFRIEFPNSSYLDYYSALTFSPNTTLVSEGTWDAKNNRLCIVACRIRNVTEDGSFNSSWQITDCSIRMSL RFPSTWSIGNTNNLVGEIWSSLDAEDSAYFNRITVKDFDIYGHQRSAGIPGLKYEYTMAEKANRSCPKVDKPYTGDKSKQFPDGRSEEMRFDMSLKDFGN RKVGWARAEAIFVGDEVPAGNLNGGINVITSSSEVPAKPKTPSKPVNISYSIKYTPFNVSTDGNGFSISAEGVYKAETGYLCMVGCKYASSSSSNDFSRN ITEELADLDSKDCEILIKIEFPSVDSKEYIQGSIESMRKESDSLYFKTLTFTAYSFYGRRGRETAWRMDLEVVMSLVSNTLLCFFVAHQIFHVKRNPEVF PFLSILMLLVLTLGSLIPLVLNFEALFSPKQDPNGFYYMRSNAVRLEVDEVILRVITMMALLLQLRLLQLAWLARQANKDNQASRSAEKKTLLIALPLYI AGALISLYFNWKHYEFGTSGTRSSSRFRSSQQHSLWTDLRTYAGLVLDGFLLPQILLNIFHNPAPKTPVLSSVFLIGTTLGRLAPHGYDLFRAKNYVDYF TWSYIYANPDADYYSTASDVVIPLLCLGFAVTVHYQQRLGGRCFFPKRFRKVEDVYQKVAATDDEELEGDSHVVGHLPSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21700			Protein of unknown function (D...		Lus10030937 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020935 [exp]	1.0	0.8791
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Lus10002742 [exp]	1.4	0.8779
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020936 [exp]	1.7	0.8547
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10002147 [exp]	2.0	0.8364
AT5G61520			Major facilitator superfamily ...		Lus10009656 [exp]	4.7	0.7805
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10001970 [exp]	7.7	0.8175
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10018311 [exp]	8.5	0.7952
AT1G11300			protein serine/threonine kinas...		Lus10007600 [exp]	8.8	0.7992
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10002741 [exp]	8.9	0.7659
AT5G25930			Protein kinase family protein ...		Lus10005491 [exp]	9.5	0.7705

Compare expression of checked genes

Lus10030937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.