Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32400 304 / 6e-104 TOM2A tobamovirus multiplication 2A (.1.2.3) AT4G28770 101 / 4e-25 Tetraspanin family protein (.1.2) AT2G20230 98 / 5e-24 Tetraspanin family protein (.1) AT2G20740 94 / 3e-23 Tetraspanin family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011042 [exp] 389 / 2e-137 AT1G32400 378 / 4e-133 tobamovirus multiplication 2A (.1.2.3) Lus10003011 [exp] 322 / 1e-111 AT1G32400 311 / 2e-107 tobamovirus multiplication 2A (.1.2.3) Lus10040108 [exp] 283 / 1e-96 AT1G32400 240 / 3e-80 tobamovirus multiplication 2A (.1.2.3) Lus10039817 [exp] 107 / 2e-27 AT2G20740 266 / 3e-90 Tetraspanin family protein (.1.2.3) Lus10022841 [exp] 100 / 9e-25 AT2G20230 294 / 2e-100 Tetraspanin family protein (.1) Lus10018584 [exp] 93 / 2e-22 AT2G20740 243 / 8e-82 Tetraspanin family protein (.1.2.3) Lus10011910 [exp] 92 / 1e-21 AT2G20230 281 / 2e-95 Tetraspanin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G146100 [exp] 348 / 2e-121 AT1G32400 329 / 8e-114 tobamovirus multiplication 2A (.1.2.3) Potri.003G087800 [exp] 344 / 6e-120 AT1G32400 319 / 7e-110 tobamovirus multiplication 2A (.1.2.3) Potri.019G101800 [exp] 100 / 2e-25 AT2G20740 238 / 1e-79 Tetraspanin family protein (.1.2.3) Potri.002G253500 [exp] 101 / 5e-25 AT2G20230 255 / 5e-85 Tetraspanin family protein (.1) Potri.013G134200 [exp] 89 / 6e-21 AT2G20740 239 / 2e-80 Tetraspanin family protein (.1.2.3) Potri.011G050900 [exp] 85 / 1e-19 AT2G20740 223 / 4e-74 Tetraspanin family protein (.1.2.3) Potri.004G041500 [exp] 77 / 8e-17 AT2G20740 226 / 3e-75 Tetraspanin family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10030939 pacid=23166755 polypeptide=Lus10030939 locus=Lus10030939.g ID=Lus10030939.BGIv1.0 annot-version=v1.0 ATGGCTTGCAGGGGGTTCTGGGAGTGCTTGCTGAAGCTGCTCAACTTCTTGTTAGCCGTTGCGGGTCTAACTATGGTTGGCTATGGAATCTATTTGTTTC TTGAGTATAAGCATGCGACAGACGATTTGCTATTGCCACCTTCCAGTGATCATGACAGTTTAATACAGCTGGGCCGCCCTATGCTTATGGCTGTTTCCCT TACTGAGAGTATCTTTGATAAGTTGCCGAAACCTTGGTTCATATACTTATTTGTTGGAGTTGGAGTGATCCTCTTTGTTGTCTCTTGCTTTGGCTGTATT GGAGCTACGACCAGGAATGGTTGCTGCCTCAGTTGTTACTCGGTCCTGATTTTCTTACTGATATCGGTGGAGCTGGGATGTGCAGCGTTCATATTTTTTG ACAAAAGTTGGCAAGAAGAACTTCCAGTTGACAAGACTGGAAATTTTGACATGATATATGGCTGCCTGAAGGAGAATTGGAAAATTATCAAGTGGGTTGC GCTTGGGTTAGTTGTCTTTGAGGCTTTGATTTTCTTGTTGGCCCTAGTGGTTAGAGCAGTTAACAGACCGGTAGAGTATGACAGTGATGATGAACTCATT GCACCAAGGCAGCAGATCCGAAAGCCATTGATGAATAGGCAGCCGCCTCCTGCAACAGGCGTCCCTGCTGCTGGAACTCTTGATCAGCGTCCAAGCAGAA ATGATGCTTGGAGTACACGTATGAGGGAAAAGTATGGGCTTGATACTGCTGAGTTCACATACAACCCGTCAGAGTCGCATAGGTACCAGCAGGTATCGCC TCAGCCCACCGAAGGAAGCCGGTGCACAATCATGTGA
AA sequence Show only first row Show all	>Lus10030939 pacid=23166755 polypeptide=Lus10030939 locus=Lus10030939.g ID=Lus10030939.BGIv1.0 annot-version=v1.0 MACRGFWECLLKLLNFLLAVAGLTMVGYGIYLFLEYKHATDDLLLPPSSDHDSLIQLGRPMLMAVSLTESIFDKLPKPWFIYLFVGVGVILFVVSCFGCI GATTRNGCCLSCYSVLIFLLISVELGCAAFIFFDKSWQEELPVDKTGNFDMIYGCLKENWKIIKWVALGLVVFEALIFLLALVVRAVNRPVEYDSDDELI APRQQIRKPLMNRQPPPATGVPAAGTLDQRPSRNDAWSTRMREKYGLDTAEFTYNPSESHRYQQVSPQPTEGSRCTIM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10030939 [exp]	0	1
AT2G34560			P-loop containing nucleoside t...		Lus10023310 [exp]	3.2	0.9072
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10039376 [exp]	17.4	0.8987
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031315 [exp]	17.6	0.8726
AT1G45688			unknown protein		Lus10029743 [exp]	24.9	0.8987
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10005102 [exp]	26.8	0.8573
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	28.4	0.8939
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030617 [exp]	30.0	0.8476
AT1G34350			unknown protein		Lus10017068 [exp]	32.8	0.8571
					Lus10023559 [exp]	38.1	0.8693
AT5G51520			Plant invertase/pectin methyle...		Lus10031712 [exp]	41.0	0.8588

Compare expression of checked genes

Lus10030939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.