Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 258 / 1e-84 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G25300 250 / 3e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17010 244 / 5e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 241 / 6e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 231 / 5e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 229 / 5e-73 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 187 / 8e-57 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 177 / 1e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G05600 174 / 8e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 172 / 4e-51 ATJRG21 jasmonate-regulated gene 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030995 [exp] 533 / 0 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10030934 [exp] 466 / 5e-166 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1) Lus10040112 [exp] 459 / 2e-163 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1) Lus10022292 [exp] 257 / 4e-84 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10032574 [exp] 253 / 5e-82 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10011980 [exp] 249 / 6e-81 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011985 [exp] 248 / 4e-80 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10015252 [exp] 245 / 2e-79 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10026173 [exp] 243 / 3e-78 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382400 [exp] 273 / 3e-90 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G381700 [exp] 260 / 3e-85 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.009G025900 [exp] 258 / 3e-84 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G355100 [exp] 253 / 1e-82 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.009G022800 [exp] 241 / 6e-78 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G023600 [exp] 218 / 1e-68 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G201000 [exp] 206 / 4e-64 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G355200 [exp] 204 / 2e-63 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.010G200900 [exp] 191 / 4e-58 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 184 / 2e-55 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10030941 pacid=23166753 polypeptide=Lus10030941 locus=Lus10030941.g ID=Lus10030941.BGIv1.0 annot-version=v1.0 ATGGCGTCATTAGGCGGCTCAATTGCTGTTGCCAATGTCCAACAGCTTGCTTCTGGATCAACGGATCATGTGCTTGATCGATACATCCGTCCTGAACTCG AGCTCGATCAAGTTTCCACTGATGGGTCTCACCAGATCCCGGTAATCGATATGATCAAGCTTGGTGGCGGCCATGATGATGCTGTTCAAGAATCAGCTAA GCTGCATTCCGCTTGCAAAGACTGGGGATTCTTCCAGGTGATTAACCACGGTGTCACAGAGGAAGTGATACAGAAAATGAAGGTGGATGTCCAGGAGTTC TTCAACCAACCATTGCAGGAAAAGATGTCGTGTGTCCAGTTGCCAAACAGCCTCGAAGGATACGGCCAGGCGTTCGTCGTATCGGAAGAACAGAAGCTTG ATTGGGGTGACATGCTCTTCATCCTTTCCCAGCCTGTTAATAGACGAAACATGAGGTTTTGGCCCACAGTTCCCTCTTCATTCAGGGCCAGTTTGGAACA GTATTCGTTAGAACTAGAAAAATTGGCATCGAGTCTGATTACTTGCATGGCAAGGAACTTGGGAGTTGAGCCAGAGAAGCTATTGGCATTGTTCGAACAA GGAATACAAAGCGTAAGAATGAACTACTACCCTCCTTGTGCATTCATTGTCAACATTGGCGATGTCATTGAGATAATAAGCAATGGGGAATACAAAAGCA TTGAGCACAGAGCAGTGGTGAATCCTCAAAAGGAGAGGCTGTCGATTGCGGCGTTCCACAACACGAATATGAAGTCAACAATTGGGCCACTCCCGGAGCT GATAAACGAGAAGAAGGAAGCCAAGTACAAATCCATATCACAAGAGGAGTTTTTCAAGCTCGCAGTAACTAGCAAGCTCGACGGTAAAGGACTCCTTTCA CGCCTGATTATCAATAACTGA
AA sequence Show only first row Show all	>Lus10030941 pacid=23166753 polypeptide=Lus10030941 locus=Lus10030941.g ID=Lus10030941.BGIv1.0 annot-version=v1.0 MASLGGSIAVANVQQLASGSTDHVLDRYIRPELELDQVSTDGSHQIPVIDMIKLGGGHDDAVQESAKLHSACKDWGFFQVINHGVTEEVIQKMKVDVQEF FNQPLQEKMSCVQLPNSLEGYGQAFVVSEEQKLDWGDMLFILSQPVNRRNMRFWPTVPSSFRASLEQYSLELEKLASSLITCMARNLGVEPEKLLALFEQ GIQSVRMNYYPPCAFIVNIGDVIEIISNGEYKSIEHRAVVNPQKERLSIAAFHNTNMKSTIGPLPELINEKKEAKYKSISQEEFFKLAVTSKLDGKGLLS RLIINN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17010			2-oxoglutarate (2OG) and Fe(II...		Lus10030941 [exp]	0	1
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10025975 [exp]	2.4	0.8497
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10033385 [exp]	4.6	0.8657
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10041165 [exp]	5.3	0.8593
AT2G03430			Ankyrin repeat family protein ...		Lus10036968 [exp]	11.5	0.7866
					Lus10023751 [exp]	22.8	0.7660
AT2G27240			Aluminium activated malate tra...		Lus10001846 [exp]	31.5	0.8187
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10006119 [exp]	43.9	0.8201
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006700 [exp]	57.9	0.7975
AT2G43610			Chitinase family protein (.1)		Lus10025948 [exp]	62.1	0.8070
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10033664 [exp]	63.5	0.7947

Compare expression of checked genes

Lus10030941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.