Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32450 863 / 0 NRT1.5 nitrate transporter 1.5 (.1) AT4G21680 726 / 0 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT5G19640 614 / 0 Major facilitator superfamily protein (.1) AT3G54140 468 / 1e-158 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 456 / 1e-153 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 442 / 2e-148 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G01180 420 / 6e-140 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02020 390 / 2e-128 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT2G26690 348 / 6e-112 Major facilitator superfamily protein (.1) AT5G46050 341 / 3e-109 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040102 [exp] 1121 / 0 AT1G32450 910 / 0.0 nitrate transporter 1.5 (.1) Lus10000673 [exp] 928 / 0 AT1G32450 931 / 0.0 nitrate transporter 1.5 (.1) Lus10011058 [exp] 918 / 0 AT1G32450 926 / 0.0 nitrate transporter 1.5 (.1) Lus10013736 [exp] 613 / 0 AT5G19640 728 / 0.0 Major facilitator superfamily protein (.1) Lus10039204 [exp] 603 / 0 AT5G19640 727 / 0.0 Major facilitator superfamily protein (.1) Lus10030287 [exp] 485 / 1e-164 AT1G32450 542 / 0.0 nitrate transporter 1.5 (.1) Lus10040099 [exp] 469 / 1e-158 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 467 / 6e-158 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 466 / 2e-157 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G088800 [exp] 925 / 0 AT1G32450 979 / 0.0 nitrate transporter 1.5 (.1) Potri.001G145200 [exp] 924 / 0 AT1G32450 949 / 0.0 nitrate transporter 1.5 (.1) Potri.014G179400 [exp] 821 / 0 AT1G32450 791 / 0.0 nitrate transporter 1.5 (.1) Potri.003G212900 [exp] 643 / 0 AT5G19640 750 / 0.0 Major facilitator superfamily protein (.1) Potri.001G013400 [exp] 640 / 0 AT5G19640 754 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 478 / 2e-162 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 460 / 2e-155 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 454 / 5e-153 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 452 / 1e-152 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 444 / 3e-149 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10030945 pacid=23166820 polypeptide=Lus10030945 locus=Lus10030945.g ID=Lus10030945.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTAACTGCATCAGAGAGCTAGTTACCTGCAACAACAACCAGGAGGAGGAGAAGAAGGTGGTGGTGATGGAGATGGAGAAACGGCAACAAC AACAAGAACAAGAAGATGATAGTGATCACGAGGAGGATTACAGCAGCAGCAGCTGCGGAAGCAACAGTACAACAACAATGGACGGAACAGTGGACTGGAA AGGAAGGCCAGCTTTCAAATCCAAATCTGGAAATTGGACTGCTGCTATCATCATCCTTGTGAACCAAGGGCTGGCGACATTAGCATTCTTTGGAGTAGGA GTGAATTTAGTGCTGTTTCTGACCAGAGTTCTGCAGCAGAATAATGCTGACGCTGCTAACAATGTCAGCAAATGGACTGGAACTGTCTACATATTCTCCC TTGTTGGTGCTTTCCTTAGTGACTCCTACTGGGGAAGATACAAGACTTGTGCCATCTTCCAAGGCATCTTTGTCATGGGTTTGGTCCTTTTGTCACTATC ATCATACCTCTTCCTCATCAAACCAAAAGGCTGCGGGGACATCGACACACCGTGCGCCTCGCACACCAACACAGAAGTCGGACTGTTCTACCTATCGATC TACCTCGTCGCGCTTGGTAATGGAGGGTACCAACCCAACATTGCCACGTTCGGGGCAGACCAGTTCGACGAGGAGGACCCTGTGGAAGGTATCGCTAAAG TCGCATTCTTTAGCTACTTCTACTTGGCACTAAACCTCGGCTCGCTCTTCTCCAACACCATACTGGGTTACTTCGAGGACGAAGGCATGTGGGCGCTTGG GTTCTGGGCATCAGCCGGCTCTGCCTTTGCAGCATTGGCCTTGTTCCTAGCCGGTTCGAGTAGGTACCGACACTTCAAGCCCACTGGAAACCCTCTCTCT AGATTCTGTCAGGTCATCGTTGCGTCCATCAAGAAGTGCAGCCATCAACTGTCGTCGACTGGTGATGATCTGTATGATGTTGATAGCAAAGATTCCTCTG GAAATGGGAGCAGGAAGATTCTCCACACTCATGGATTCAAGTTCCTGGACAGAGCAGCTTACATAACATCAAGAGATATAGACAACCAAAAGAAAGGGTT TCGAAACCCATGGCAGCTCTGCCCCATCACACAAGTAGAAGAAGTGAAATGCATACTGAGACTCTTACCCATATGGCTATGCACAATCATTTACTCAGTA GTATTCACACAAATGGCTTCTCTGTTCGTGGAGCAAGGAGCCGCAATGCAAACCACAATCTCAGGGTTCCGAATCCCGCCAGCAAGCATGTCGAGCTTCG ACATCCTAAGCGTGGCCCTCTTCATCTTCCTCTACAGGCGAGTCCTCGACCCATTCGTCGCAACAATCAAGAGAAACAAATTACGCAGCACCAGCACCAC CAGGGGATTCACCGAGCTGCAGAGGATGGGGGTCGGGCTAGTGATAGCCGTGATGGCAATGATCACAGCAGGGATCGTCGAATCCTACAGGCTGAAATAC GCGAGAAAGGACTGCTCGCATTGCGAAGGGTCGAGCTCCTTGAGCATACTCTGGCAGATACCGCAGTATGCGCTGATAGGAGCTTCGGAGGTGTTCATGT ACGTCGGGCAGCTCGAGTTCTTCAACGCTCAGGCTCCCGACGGGTTGAAGAGCTTTGGGAGCGCGCTGTGCATGACTTCGATCTCTTTGGGGAACTATGT TAGTAGCCTCTTGGTGACTATGGTGATGAAGATCTCTACTGAGGATCACATGCCTGGATGGATCCCTGGGAATCTGAACAAAGGTCACTTGGATAGGTTC TACTTCTTGTTGGCGGCGTTGACTTCGGTTGACTTGGGTGTGTACATTGTTTGTGCTAAGTGGTACAAAGGGATTCAGCTCGAATCGAAATTCGACAGCA ACAACTCGGAGGAGTATGATGATGACAAAAAATGTCAAGTCTAA
AA sequence Show only first row Show all	>Lus10030945 pacid=23166820 polypeptide=Lus10030945 locus=Lus10030945.g ID=Lus10030945.BGIv1.0 annot-version=v1.0 MAAANCIRELVTCNNNQEEEKKVVVMEMEKRQQQQEQEDDSDHEEDYSSSSCGSNSTTTMDGTVDWKGRPAFKSKSGNWTAAIIILVNQGLATLAFFGVG VNLVLFLTRVLQQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQGIFVMGLVLLSLSSYLFLIKPKGCGDIDTPCASHTNTEVGLFYLSI YLVALGNGGYQPNIATFGADQFDEEDPVEGIAKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSAFAALALFLAGSSRYRHFKPTGNPLS RFCQVIVASIKKCSHQLSSTGDDLYDVDSKDSSGNGSRKILHTHGFKFLDRAAYITSRDIDNQKKGFRNPWQLCPITQVEEVKCILRLLPIWLCTIIYSV VFTQMASLFVEQGAAMQTTISGFRIPPASMSSFDILSVALFIFLYRRVLDPFVATIKRNKLRSTSTTRGFTELQRMGVGLVIAVMAMITAGIVESYRLKY ARKDCSHCEGSSSLSILWQIPQYALIGASEVFMYVGQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLVTMVMKISTEDHMPGWIPGNLNKGHLDRF YFLLAALTSVDLGVYIVCAKWYKGIQLESKFDSNNSEEYDDDKKCQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030945 [exp]	0	1
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10006574 [exp]	3.2	0.8619
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10031378 [exp]	14.2	0.8518
AT5G24080			Protein kinase superfamily pro...		Lus10039315 [exp]	14.4	0.8458
AT5G62270			unknown protein		Lus10035022 [exp]	18.5	0.8552
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10041767 [exp]	24.9	0.8242
AT5G53800			unknown protein		Lus10003591 [exp]	31.7	0.8383
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Lus10010915 [exp]	32.2	0.8222
AT3G60540			Preprotein translocase Sec, Se...		Lus10011428 [exp]	34.7	0.8423
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Lus10004212 [exp]	35.6	0.8434
AT2G25280			unknown protein		Lus10001950 [exp]	36.7	0.8300

Compare expression of checked genes

Lus10030945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.