Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02040 859 / 0 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 753 / 0 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT3G54140 711 / 0 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 696 / 0 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02020 693 / 0 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT5G46050 488 / 5e-167 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT1G32450 479 / 2e-163 NRT1.5 nitrate transporter 1.5 (.1) AT5G46040 473 / 6e-161 Major facilitator superfamily protein (.1) AT2G40460 467 / 9e-159 Major facilitator superfamily protein (.1) AT4G21680 453 / 2e-153 NRT1.8 NITRATE TRANSPORTER 1.8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040099 [exp] 1122 / 0 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040100 [exp] 1021 / 0 AT2G02040 835 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 995 / 0 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 993 / 0 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10035516 [exp] 703 / 0 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10018207 [exp] 696 / 0 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10021132 [exp] 664 / 0 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10040698 [exp] 606 / 0 AT5G01180 709 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10011786 [exp] 506 / 1e-173 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G100200 [exp] 987 / 0 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 909 / 0 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.009G042400 [exp] 701 / 0 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 698 / 0 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 695 / 0 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 694 / 0 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 690 / 0 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.008G170100 [exp] 528 / 0 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258900 [exp] 521 / 1e-179 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 518 / 7e-179 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10030947 pacid=23166719 polypeptide=Lus10030947 locus=Lus10030947.g ID=Lus10030947.BGIv1.0 annot-version=v1.0 ATGGAGTGTCGGAAGTTCATTCACCATCAATCTTTTACTTTAGACGGTGGATTGTCTCCATCAGACCCTGGTGAGCGCGATGGACAATACACAGGAGACG GCTCAGTTGATATCAGTGGACAGCCTGTCCTGAAGCATAACACTGGAAATTGGAGAGCCTGCCCTTTCATCCTTGGCACGGAGTGTTGTGAACGGTTGGC CTACTATGGGATCGCTACGAATCTAGTAACTTATCTTACGGCAAACATGCACGAGGGAAACGTATCTGCTGCAAGAACTGTTACTACGTGGTCCGGCACT TGCTACATTACACCACTCATTGGAGCTGTACTGGCTGATGCTTGTTGGGGAAGATATTGGACCATTGCTGCTTTCTCAACTATTTACTTCCTTGGGATGT GTACATTGACCCTTTCGGCAGCAGTTCCTGCACTGAAGCCTTCTGACTGTGTCGGTTCTCTATGTCCTCCGGCAACTATGCCTCAGTATGCAGTGTTCTA CTTCGGTTTATATCTGATTGCACTTGGGACAGGTGGCATCAAACCTTGTGTTTCATCATTTGGTGCTGACCAGTTTGATGATACTGATCCTATAGAGAGG GTGAATAAGGGGTCCTTCTTCAACTGGTTTTACTTTTCCATCAACATCGGTGCCCTTATCTCAAGCAGCTTAATCGTATACATTCAAGATAATGTAGGTT GGGCTCTAGGTTTTGGCGTGCCTGCAATATTTATGGGCATTGCTATAGCAAGTTTCTTTTCTGGCACCCCGCTCTACAGATACCAGAAACCTGGGGGAAG TCCAATTACAAGAATGTGTCAGGTCTTGGTTGCATCTTTCCGTAAGTCGAACATGGAGGTTCCTTCTGACAGCACCCTCTTGTATGAAACACAAGATCAG AGATCTATGGTTGAAGGAAGCCGTAAGCTGGAGCACACTGATGAGCTCAAGTGTCTCGATAGAGCTTCTGTACTGTCAGATGCGGAGCTGAAAACCGGGG ACTTCTCTAATTCCTGGAGGCTTTGTACGGTAACACAAGTTGAGGAGCTGAAAATATTGATTCGCATGTTCCCCATCTGGGCCACAGGTATCGTCTTTTC TGCAGTCTACGCCCAGATGTCCACAATGTTTGTGGAACAGGGGATGTTGATGGACTCAACGATCGGTTCTTTCAAAATTCCTCCGGCTTCTCTATCAACA TTCGACGTGATCAGTGTCATTTTCTGGGTGCCCGTGTACGACGCAATCATTGTTCCAATCGCAAGGAAGTTCACAGGAAATGGCAGAGGCTTTTCGGAGC TGCAACGTATGGGAATTGGCCTGCTAATATCAATTTTCGCCATGACTGCAGCTGCTCTCGTCGAGATCAAGCGTCTGCAGCTAGCCAACGAGCTTGGACT GGTTGACAAAGCGGTTCCAGTGCCACTTAGCATCTTCTGGCAGATTCCCCAGTACATGCTGATAGGCGCTGCAGAGGTCTTTACATTCATCGGGCAGCTC GAGTTCTTCTACGAACAGTCTCCAGACGCAATGCGAAGCTTGTGCTCTGCGTTGGCGCTCCTGACAACCTCTCTGGGTAACTATCTGAGCTCTTTCATCC TCACCATGGTCGCATATTTCACCACCAAGGGCGGGAAGCCAGGATGGATTCCGGATAACTTGAATGAGGGGCATGTCGATTATTTCTTCTGGCTGTTGGC CTTGTTGAGCTTGGGAAACATGTTGGTCTACGTCTCCTGTTCAATGAAATATAAACAGAAGAAAGCCGTCTAG
AA sequence Show only first row Show all	>Lus10030947 pacid=23166719 polypeptide=Lus10030947 locus=Lus10030947.g ID=Lus10030947.BGIv1.0 annot-version=v1.0 MECRKFIHHQSFTLDGGLSPSDPGERDGQYTGDGSVDISGQPVLKHNTGNWRACPFILGTECCERLAYYGIATNLVTYLTANMHEGNVSAARTVTTWSGT CYITPLIGAVLADACWGRYWTIAAFSTIYFLGMCTLTLSAAVPALKPSDCVGSLCPPATMPQYAVFYFGLYLIALGTGGIKPCVSSFGADQFDDTDPIER VNKGSFFNWFYFSINIGALISSSLIVYIQDNVGWALGFGVPAIFMGIAIASFFSGTPLYRYQKPGGSPITRMCQVLVASFRKSNMEVPSDSTLLYETQDQ RSMVEGSRKLEHTDELKCLDRASVLSDAELKTGDFSNSWRLCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTMFVEQGMLMDSTIGSFKIPPASLST FDVISVIFWVPVYDAIIVPIARKFTGNGRGFSELQRMGIGLLISIFAMTAAALVEIKRLQLANELGLVDKAVPVPLSIFWQIPQYMLIGAAEVFTFIGQL EFFYEQSPDAMRSLCSALALLTTSLGNYLSSFILTMVAYFTTKGGKPGWIPDNLNEGHVDYFFWLLALLSLGNMLVYVSCSMKYKQKKAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10030947 [exp]	0	1
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	4.9	0.7554
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	10.7	0.7510
AT5G65760			Serine carboxypeptidase S28 fa...		Lus10011603 [exp]	12.0	0.7147
AT3G49800			BSD domain-containing protein ...		Lus10011556 [exp]	17.5	0.7535
AT4G32250			Protein kinase superfamily pro...		Lus10009358 [exp]	19.1	0.6480
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10019908 [exp]	25.7	0.7338
AT3G01930			Major facilitator superfamily ...		Lus10032034 [exp]	30.4	0.6415
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10025566 [exp]	31.0	0.7373
AT1G80630			RNI-like superfamily protein (...		Lus10041648 [exp]	31.0	0.6743
AT1G43130		LCV2	like COV 2 (.1)		Lus10028563 [exp]	32.7	0.7164

Compare expression of checked genes

Lus10030947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.