Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35390 613 / 0 Phosphoribosyltransferase family protein (.1.2.3) AT1G32380 595 / 0 PRS2 phosphoribosyl pyrophosphate (PRPP) synthase 2 (.1) AT2G44530 555 / 0 Phosphoribosyltransferase family protein (.1.2) AT1G10700 71 / 2e-13 PRS3 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) AT2G42910 59 / 2e-09 Phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040098 [exp] 694 / 0 AT2G35390 639 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10012074 [exp] 572 / 0 AT2G44530 605 / 0.0 Phosphoribosyltransferase family protein (.1.2) Lus10027908 [exp] 513 / 0 AT2G44530 555 / 0.0 Phosphoribosyltransferase family protein (.1.2) Lus10006202 [exp] 73 / 8e-14 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10036849 [exp] 72 / 1e-13 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10020768 [exp] 67 / 6e-12 AT2G42910 582 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10007345 [exp] 66 / 8e-12 AT2G42910 579 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10010935 [exp] 64 / 4e-11 AT2G42910 572 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10031395 [exp] 63 / 9e-11 AT2G42910 578 / 0.0 Phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145700 [exp] 627 / 0 AT2G35390 657 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.003G088400 [exp] 625 / 0 AT2G35390 655 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.014G179600 [exp] 568 / 0 AT2G44530 628 / 0.0 Phosphoribosyltransferase family protein (.1.2) Potri.010G045000 [exp] 64 / 6e-11 AT1G10700 566 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Potri.005G202100 [exp] 62 / 1e-10 AT2G42910 565 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.002G059700 [exp] 61 / 3e-10 AT2G42910 575 / 0.0 Phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10030948 pacid=23166794 polypeptide=Lus10030948 locus=Lus10030948.g ID=Lus10030948.BGIv1.0 annot-version=v1.0 ATGGCGTCGCTAACTCTGCAACCTCCTTCTCAAACCGCGCTTTCTCCCCCCTCCCGCCGCCTGCCGATTTTCCACCAGCACCGCTCCAGCCTTCGCCTCA ATATTCGCGCTCAAAACACCGCCAAATTTGATGTAACTGAATCACTAAATATTGGAAATGGAAAGCCATCTGTGCCGGTTCTCAACGAAAGGACTCTGCC AAAGTTCTTAGATTCCGCCGCTATGGAGAAAACGGCCAGCATGCATGGTTCTAGGCTAAAATTGTTTTCTGGCTCAGCAAATCCTATTCTCTCCCAAGAA ATTGCTTGGTATATGGGAAAGGAACTGGGTAACATCAACATAAAGCGATTTGCAGATGGTGAAATATATGTCAAGCTGCAAGAGAGTGTTAGGGGCTGTG ATGTCTATTTAATACAGCCTACCTCTCCCCCAGCAAATGAGAACCTCATGGAGCTTTTGGTCATGATAGATGCTTGTCGCAGAGCTTCAGCCAAGACTAT CACGGCTACTCAGGGCCGTGAGTCTATTGCTGCAAAGCTTGTCGCGAATCTTCTAACAGAAGCGGGTGCTAATCGTGTTCTTGCCTGTGATCTTCACTCT GGACAATCAATGGGATACTTTGACATTCCTGTGGACCATGTGTACTGCCAGCCTGTTATCCTAGATTACCTTGCAAGCAAGACTATCAGCTCCAACGACC TGGTTGTAGTTTCACCTGATGTTGGTGGGGTTGCAAGGGCACGTGCTTTTGCAAAAAAATTGTCAGATGCTCCTTTGGCGATTGTGGACAAAAGGCGTCA TGGTCATAATGTTGCTGAGGTGATGAACCTCATTGGTGATGTAAAAGGGAAGGTTGCAGTTATGGTGGATGACATGATTGACACTGCTGGTACAATTGCA AAAGGAGCAGAGCTGTTGCACCAAGAAGGAGCTAGAGAAGTATACGCCTGCTGCACACATGCTGTCTTCAGTCCTCCTGCAATCGAAAGGCTGTCAAGTG GCCTGTTTCAAGAAGTCATCACGACCAACACGATTCCGGTGGCAGAAAAGAACTACTTCCCCCAGTTGACGATCCTCTCTGTAGCAAATCTCTTGGGGGA AACGATTTGGCGTGTGCACGACGATTGTTCTGTCAGCAGCATTTTCCAATAA
AA sequence Show only first row Show all	>Lus10030948 pacid=23166794 polypeptide=Lus10030948 locus=Lus10030948.g ID=Lus10030948.BGIv1.0 annot-version=v1.0 MASLTLQPPSQTALSPPSRRLPIFHQHRSSLRLNIRAQNTAKFDVTESLNIGNGKPSVPVLNERTLPKFLDSAAMEKTASMHGSRLKLFSGSANPILSQE IAWYMGKELGNINIKRFADGEIYVKLQESVRGCDVYLIQPTSPPANENLMELLVMIDACRRASAKTITATQGRESIAAKLVANLLTEAGANRVLACDLHS GQSMGYFDIPVDHVYCQPVILDYLASKTISSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIA KGAELLHQEGAREVYACCTHAVFSPPAIERLSSGLFQEVITTNTIPVAEKNYFPQLTILSVANLLGETIWRVHDDCSVSSIFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35390			Phosphoribosyltransferase fami...		Lus10030948 [exp]	0	1
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10040503 [exp]	5.3	0.8162
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10042736 [exp]	7.2	0.8141
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10031423 [exp]	15.3	0.7854
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10022990 [exp]	17.0	0.8008
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018393 [exp]	18.7	0.7967
AT4G27490			3'-5'-exoribonuclease family p...		Lus10037395 [exp]	19.6	0.7973
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	19.7	0.8002
AT5G49300	GATA	GATA16	GATA transcription factor 16 (...		Lus10010027 [exp]	21.6	0.7442
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10011915 [exp]	22.8	0.7926
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10015718 [exp]	24.3	0.7578

Compare expression of checked genes

Lus10030948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.