Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32060 633 / 0 PRK phosphoribulokinase (.1) AT1G26190 64 / 8e-11 Phosphoribulokinase / Uridine kinase family (.1) AT3G27440 63 / 1e-10 UKL5 uridine kinase-like 5 (.1) AT1G73980 55 / 7e-08 Phosphoribulokinase / Uridine kinase family (.1) AT3G27190 54 / 8e-08 UKL2 uridine kinase-like 2 (.1) AT1G55810 53 / 1e-07 UKL3 uridine kinase-like 3 (.1.2.3) AT5G40870 52 / 4e-07 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT4G26510 52 / 4e-07 UKL4 uridine kinase-like 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000674 [exp] 645 / 0 AT1G32060 667 / 0.0 phosphoribulokinase (.1) Lus10011060 [exp] 602 / 0 AT1G32060 624 / 0.0 phosphoribulokinase (.1) Lus10021310 [exp] 62 / 2e-10 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10030919 [exp] 62 / 4e-10 AT1G26190 1007 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030570 [exp] 62 / 5e-10 AT1G26190 1018 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10022289 [exp] 61 / 5e-10 AT3G27440 625 / 0.0 uridine kinase-like 5 (.1) Lus10035216 [exp] 61 / 7e-10 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10016989 [exp] 61 / 1e-09 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2) Lus10009040 [exp] 59 / 4e-09 AT1G73980 971 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G099400 [exp] 652 / 0 AT1G32060 690 / 0.0 phosphoribulokinase (.1) Potri.001G134000 [exp] 649 / 0 AT1G32060 699 / 0.0 phosphoribulokinase (.1) Potri.017G071200 [exp] 66 / 2e-11 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.008G110500 [exp] 59 / 4e-09 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.010G134400 [exp] 57 / 1e-08 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.001G467800 [exp] 57 / 1e-08 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.015G055400 [exp] 57 / 2e-08 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.017G069600 [exp] 56 / 2e-08 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.011G165100 [exp] 56 / 3e-08 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2) Potri.001G332100 [exp] 54 / 1e-07 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00485 [flax] [poplar] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Lus10030949 pacid=23166701 polypeptide=Lus10030949 locus=Lus10030949.g ID=Lus10030949.BGIv1.0 annot-version=v1.0 ATGGCAATCTTCTGTGGAACCCCAGCATCTAATCACTCACTACTCAACACCCAAAGAAAGCACCACCACTTCCTTTTCCTCAGCAACCCCAGATCACGAA CAACAACAACATGCTCTGCATCGGCGGGTGATCACACTGTGGTGATAGGCCTGGCGGCGGACTCGGGATGCGGGAAGAGCACCTTCATGCGGCGGCTGAC TTCCGTGTTTGGCGGCGCCGCAGAGCCGCCAAGAGGAGGGAACCCAGACTCCAACACCCTCATCAGCGACACCACAACGGTCATCTGCCTCGACGACTAC CACTCGCTCGACCGAACCGGACGGAAGGCTAACGGCGTCACGGCGCTGGACCCCAGGGCTAACGACTTCGATCTGATGTACGAGCAGGTGAAGGCGTTGA AAGAAGGAGTTGCCGTGGAGAAGCCTGTCTATAACCATGTTAGCGGGTTGCTTGATCCAGCCGAGCTCATTCTGCCTCCCAAGATCCTCGTCGTTGAAGG ACTCCACCCCATGTTTGATGAACGTGTGAGAAAGCTGCTGGACTTCAGCATCTATTTGGACATCAGCAACGAAAGAGACATGGCTGAAAGAGGGCACAGC CTGGAGAGCATCAAAGCTAGTATCCAAGCTCGCAAGCCCGATTTCGACGCCTACATTGATCCTCAGAAGCAGTACGCGGACGCAGTGATCGAGGTGCTCC CAACCAAACTCATCCCGGACGACAACGAAGGGAAGGTCTTGAGGGTTAGGCTTATAATGAAGGAAGGTGTCGAGTTCTTCAACCCAGTCTACTTGTTCGA CGAAGGCTCCACCATTTCCTGGATCCCTTGTGGAAGGAAGCTCACTTGTTCATACCCTGGCATCAACTTCTCCTATGGCCCTGACACCTATTTTGGCCAT GAGGTGTCTGTGTTGGAGATGGACGGGCAATTCGATAGACTAGATGAGCTGATCTACGTGGAAAGCCACCTGAGCAACATTTCCACCAAGTACTACGGGG AAATCACTCAACAGATGTTGAAGCATGCTGATTTCCCTGGGAGTAGCAATGGCACTGGTCTTTTTCAGACCATTGTTGGGTTGAAAATTAGAGAACTTTA CGAGCAAATCGTCGCTACCAAGTCGAACAATCCCCTTCAGGCCACTAAAGCCTGA
AA sequence Show only first row Show all	>Lus10030949 pacid=23166701 polypeptide=Lus10030949 locus=Lus10030949.g ID=Lus10030949.BGIv1.0 annot-version=v1.0 MAIFCGTPASNHSLLNTQRKHHHFLFLSNPRSRTTTTCSASAGDHTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDY HSLDRTGRKANGVTALDPRANDFDLMYEQVKALKEGVAVEKPVYNHVSGLLDPAELILPPKILVVEGLHPMFDERVRKLLDFSIYLDISNERDMAERGHS LESIKASIQARKPDFDAYIDPQKQYADAVIEVLPTKLIPDDNEGKVLRVRLIMKEGVEFFNPVYLFDEGSTISWIPCGRKLTCSYPGINFSYGPDTYFGH EVSVLEMDGQFDRLDELIYVESHLSNISTKYYGEITQQMLKHADFPGSSNGTGLFQTIVGLKIRELYEQIVATKSNNPLQATKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10030949 [exp]	0	1
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10015739 [exp]	2.0	0.9002
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10006386 [exp]	2.4	0.9073
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10032756 [exp]	3.5	0.9023
AT1G04780			Ankyrin repeat family protein ...		Lus10011743 [exp]	3.7	0.8951
AT3G19800			Protein of unknown function (D...		Lus10040969 [exp]	3.9	0.9085
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10015504 [exp]	4.9	0.8978
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10004151 [exp]	9.0	0.8868
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012340 [exp]	10.7	0.8637
AT5G59250			Major facilitator superfamily ...		Lus10016505 [exp]	13.0	0.8701
AT5G10530			Concanavalin A-like lectin pro...		Lus10007075 [exp]	13.7	0.8553

Compare expression of checked genes

Lus10030949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.