Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13690 360 / 9e-113 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G55200 357 / 2e-112 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G56790 350 / 1e-109 Protein kinase superfamily protein (.1) AT1G10620 249 / 1e-71 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G70460 245 / 2e-70 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 242 / 5e-69 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT5G38560 238 / 4e-68 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT2G18470 234 / 4e-67 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT1G68690 234 / 2e-66 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G26150 227 / 1e-63 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040097 [exp] 1408 / 0 AT1G55200 444 / 5e-145 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009559 [exp] 749 / 0 AT3G13690 418 / 2e-134 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10006148 [exp] 367 / 2e-115 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 367 / 2e-114 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020385 [exp] 358 / 5e-114 AT5G61540 429 / 1e-147 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10008566 [exp] 338 / 4e-105 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020384 [exp] 297 / 8e-92 AT3G13690 101 / 2e-22 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018944 [exp] 257 / 8e-76 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026335 [exp] 237 / 1e-69 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G034900 [exp] 365 / 8e-115 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G200000 [exp] 363 / 2e-114 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 345 / 1e-107 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G038300 [exp] 306 / 1e-92 AT3G13690 537 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G130300 [exp] 301 / 8e-91 AT1G55200 535 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G185500 [exp] 276 / 1e-82 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.003G189850 [exp] 254 / 2e-73 AT5G56790 319 / 3e-99 Protein kinase superfamily protein (.1) Potri.001G035900 [exp] 246 / 6e-71 AT5G56790 311 / 1e-96 Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 246 / 1e-70 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.003G053301 [exp] 236 / 5e-68 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10030950 pacid=23166767 polypeptide=Lus10030950 locus=Lus10030950.g ID=Lus10030950.BGIv1.0 annot-version=v1.0 ATGAAGAGAGGAGCAGAAAGAGAAGTGATAGTAGTTGCAGTTGACGCCGGGAGAGAGATAACTGATTATGCAATTGAGTGGGTTCTTAGGAATGTCGCCA CATCCCTTGATTCCCTCATCTTTCTCGCTATCCTCCCTTCCCATGAAACCATCGCTTCCCCTGCTCCTAGTAGTAACGCAACACCCCAATCCTTACGTGG ACTTATGAAGAAATGGGTTATGAAGAAACTTTACCAGCCAGATGTGCATCCTGATAATTATCTAAGGAAGGCAGTTCACCAGGAAGAGGCTCACAGAATC AACAAAGTCTGCCTCGATACCATCCGCCATCTCTGCCGGATTCACAAGAAACAGCTGCAAACCGAAGTCAAATTTATAACCGACGCACAGCTCGGCTCTG TTGCATCTACTGCCATGGATGTTGGAGCTACCTGGGTTGTTCTTGATAGTCGGCTGAAGAAAGAAGGGGATTTCTGCATGAGACAACTGAAATGCAACAT TGTGGTGATGGAGCAATCTGTCCCTAAGGTTATGAGAACAGCACTGAATCCTAATCGGACGAGGACAAGGGACAACTCCATTAATGCTTATCCAACTAAT AACCTGCTTCTGGAGCGATCTCGCAAGGATGACGACGAAGATGATGCGTCCAATCCTAGCAAAACTAGCTCTGGAGCAGATAGCGATCAAGGGTCGGTAA GCAGTCCAGATGTAAAGGACAGTACTTTCAGGAAGAAGCCGTCCCGTTCACTTGGCCCTCTGCTCCATTTGAAGTCAGAACTTGTCATCAAAGGGGACAT TCCTCAGGTTGGGTTGACCCAGAACGATTCTGATGTTTTCCCCTCCATGGCACAGACAATTAGAACACCAAATGGCAAGGTGAAGAGCTACAGCGGACTT TTAAACTCTGGAAGAGGCAAAAAATTAAACAGAAGAGCAGCCCTGGGGAGGAGATCATTCGATGTATCTGGGTTGGCCAGATTCCCACAAAGTTTCAAGG CAGACAACAACAAAAACAAAAACTCAGACTCAGCAGTAGAAGAAGAAAAACAACATGATACAATTCACCCTGCAGGTCCGTCAAACATTGCAGAAAGAAG CTCAAGCATCCGAATGGCTATATCCATTTCAATCAAACCTCCACGGATTCCACCCCCACTGTGCTCCATCTGCAAACACGTTGCTCCAATTTTCGGCAAG CCGCCCAAGAAATTCGGTTTCCACGAGATCAAGGCGGCCACAGATGGGTTCTCCGCTGAAAACATTTTGGCAGAGGGTGGACGTGGCCTTGTCTACAAGG GAAAGCTTTCGGATGGACAGGCTGTCGCGGTGAAGAAGTACGAGGCGCCGGTCACAGCCCACAGTGCCTCAGAGTTTTGCTCCGAGGTGGAGGTGTTGAG CTTTGCTCACCACCGGAACTTAGTGATGTTGATTGGTTACTGTATCGAGACGGAAGAATGGCTGTTGGTTTATGAGTTGGCTTGTAATGGATCGTTGGAC AAGCATCTGTACGGGGATGAACAAGTAATAATGAGTTGGGAGCACAGATTGAAGGTTGCTGTTGGAGCTGGTAGAGGCTTGAGATACCTTCATGATGATT GCAGAGTTGGCTGCATTATTCATAGAGATTTCAGGCCCCAGAATATCCTACTTACTCATGAATTTGACACCATGGTGGGAGAATTTGGGCTGGCAAGATG GCAATCAGACGGACAGCAAGCTGAGGAAACTCGAGTTATGGGCGCAACGGGGTATTTAGCTCCAGAGTACATAGAAGCAGGGCTAATAACAGAGAAAGCT GATGTTTACGCATTTGGGATGGTTCTTCTGGAGCTTCTTTGCGGGGTAAAAGCCACCGAGTTCTCGACTAACATGGGACCAAAATTCTTGCTAGAACTGG GTCCTTGGCTGCGAGAGAGAGATGTAGTGAACGAGATACTAGACCCACGGCTGCAGGATAGCTACGTCGAGAAGGAGGTGAAGAGTATGATCTATGCTTC TAGCTTGTGTCTATCACCTGACCCCCAGACCAGACCCAATATGTCCAAGGCACGTCACCTTCACGCACAAGTTGGTTTTTATCACGTTTTAAAGATCCTA GAAGGAGACATACCGCTAGATGCAGTCAACAACAACAGTGTACAACAAGAAGAAACCGCCTATCCAAACCAGTTTGTGAATATGATGTACGGTTCAGAGA CGCCAGTTTTTTCACTGTCCAAGGAACCGTCGTATCGTCGGAACATCTCATTTCTAGCCGCCAATGATAATCATTTCAAACAATGTGACGCGGACTTTAG CGGGGAATACAACGCCTATATACAAGGTTCGTTGGCTAAATTCTTTCAAGGGCTCAACAGACATGGAAAATCGACTCCCGATCAAGAATCGATTCAGCTA TCGAAGGGAAATTCATGA
AA sequence Show only first row Show all	>Lus10030950 pacid=23166767 polypeptide=Lus10030950 locus=Lus10030950.g ID=Lus10030950.BGIv1.0 annot-version=v1.0 MKRGAEREVIVVAVDAGREITDYAIEWVLRNVATSLDSLIFLAILPSHETIASPAPSSNATPQSLRGLMKKWVMKKLYQPDVHPDNYLRKAVHQEEAHRI NKVCLDTIRHLCRIHKKQLQTEVKFITDAQLGSVASTAMDVGATWVVLDSRLKKEGDFCMRQLKCNIVVMEQSVPKVMRTALNPNRTRTRDNSINAYPTN NLLLERSRKDDDEDDASNPSKTSSGADSDQGSVSSPDVKDSTFRKKPSRSLGPLLHLKSELVIKGDIPQVGLTQNDSDVFPSMAQTIRTPNGKVKSYSGL LNSGRGKKLNRRAALGRRSFDVSGLARFPQSFKADNNKNKNSDSAVEEEKQHDTIHPAGPSNIAERSSSIRMAISISIKPPRIPPPLCSICKHVAPIFGK PPKKFGFHEIKAATDGFSAENILAEGGRGLVYKGKLSDGQAVAVKKYEAPVTAHSASEFCSEVEVLSFAHHRNLVMLIGYCIETEEWLLVYELACNGSLD KHLYGDEQVIMSWEHRLKVAVGAGRGLRYLHDDCRVGCIIHRDFRPQNILLTHEFDTMVGEFGLARWQSDGQQAEETRVMGATGYLAPEYIEAGLITEKA DVYAFGMVLLELLCGVKATEFSTNMGPKFLLELGPWLRERDVVNEILDPRLQDSYVEKEVKSMIYASSLCLSPDPQTRPNMSKARHLHAQVGFYHVLKIL EGDIPLDAVNNNSVQQEETAYPNQFVNMMYGSETPVFSLSKEPSYRRNISFLAANDNHFKQCDADFSGEYNAYIQGSLAKFFQGLNRHGKSTPDQESIQL SKGNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13690			Protein kinase protein with ad...		Lus10030950 [exp]	0	1
					Lus10030151 [exp]	3.6	0.8675
AT2G13810		EDTS5, ALD1	eds two suppressor 5, AGD2-lik...		Lus10020959 [exp]	3.7	0.8584
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Lus10022289 [exp]	10.5	0.8518
AT1G55200			Protein kinase protein with ad...		Lus10040097 [exp]	10.5	0.8375
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10041248 [exp]	14.7	0.8404
AT1G13970			Protein of unknown function (D...		Lus10000174 [exp]	15.5	0.8389
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	15.7	0.8462
AT1G13970			Protein of unknown function (D...		Lus10036799 [exp]	17.5	0.8364
AT3G27470			Protein of unknown function (D...		Lus10032090 [exp]	19.9	0.8424
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	22.2	0.8384

Compare expression of checked genes

Lus10030950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.