Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32190 410 / 1e-141 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G30380 323 / 2e-108 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 319 / 7e-108 alpha/beta-Hydrolases superfamily protein (.1) AT4G31020 319 / 9e-108 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G24760 308 / 9e-103 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 305 / 2e-101 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 303 / 1e-100 alpha/beta-Hydrolases superfamily protein (.1) AT5G38220 293 / 6e-97 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 286 / 3e-95 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 282 / 2e-92 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040096 [exp] 551 / 0 AT1G32190 452 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 323 / 2e-108 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035148 [exp] 323 / 4e-108 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040038 [exp] 316 / 1e-106 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10019604 [exp] 311 / 2e-104 AT4G31020 487 / 9e-176 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10022307 [exp] 303 / 4e-100 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10017617 [exp] 300 / 1e-99 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10033575 [exp] 298 / 8e-99 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10036842 [exp] 286 / 1e-93 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G136400 [exp] 459 / 3e-161 AT1G32190 412 / 1e-142 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G096900 [exp] 457 / 7e-161 AT1G32190 387 / 7e-133 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G111400 [exp] 332 / 9e-113 AT4G31020 447 / 4e-160 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G188100 [exp] 325 / 2e-110 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G112300 [exp] 318 / 3e-106 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 318 / 7e-106 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.015G087100 [exp] 310 / 3e-103 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 310 / 4e-103 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G340000 [exp] 310 / 5e-103 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G136900 [exp] 308 / 3e-102 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10030951 pacid=23166801 polypeptide=Lus10030951 locus=Lus10030951.g ID=Lus10030951.BGIv1.0 annot-version=v1.0 ATGGGTTGCGGTCTATCTCAATTAGCTGCCAAATTCGCCTTCTTCCCACCATCACCGCCGACTTACCAGATCAAGAAGAAGGACAATGGCAAGCTGACGG TGGTCTCAACTTCTCCTTCTCCATCCCTTCCCTTACCTCTCCCTGATGACAACTCACTCGACGTCCTCCTTATTGACACCAAACGAGGCAACAAGATCGT CGCTTTCTACCTCAGAAATCCTTACGCCAGGCTCACTCTGCTCTACTCTCACGGTAATGCCGCTGACCTCGGTCAGCTCTACGACCTCTTCGTCCAGCTC AAGCTCAACCTCCGTGTCAATCTCATCGGATACGACTATTCTGGTTATGGGGCCTCCACTGGTAAGCCAAGTGAGTCCAATACGTATGCTGATATAGAAG CAGTGTATCAGTGCCTTCAGACGGATTATGGAGTTAGCCAGGAAGATCTTATCTTATACGGCCAGTCTGTGGGGAGTGGACCAACCTTGCACTTGGCAGC CAAGCTTCCAAGGCTAAGAGGGGTAGTCTTGCACAGTGCCATTCTTTCTGGTTTGCGAGTTCTCTGCCATGTAAAGTTCTCATTTTGCTTCGACATTTAC CGGAATATCAGGAAAATTCAGATGGTGAAAAGTCCCGTGCTAGTCATACATGGTACAGAGGATGATGTTGTGAACTGGTTACACGGGAACGGTCTGTGGA AACTGGCAAGGGAACCATATGAACCTTTATGGATTAAAGGGGGCGGGCACTGTAACTTGGAGCTATACCCTGATTACATCCGCCATCTTTGCAGGTTCAT ATATGAGATGGAGAATATGACCACCAAAGACCACCTTAAAAGAGTACGAGAGAAGCTACGACTAAAGCCAAGGTCTAACCGTCGTCATTCTTCTTCTTCC TCTTCCTCTCCCTGCTGTAGGCTTAGACTTTGGCGTCCAAGATGCTCAGGATGTTTCACACCAAGTTGCATAAAATGTCACTGCCGCAGCAAATGCTTAG AAGGTGGTTCAGGATGTTGGAAATGCTGCTCTCTACAATGGTGTTGGAAGCCCTTAGCGTGTCCAAAGTGTTCAACTCCTTCCTGTTCCTGCTGCTCATG TTCTTGCTCCTGCTCCTGTTCATTGGCGAGTTGCTTCCCATCCTGTTGCTGCTGCAGCACGGCCCGTGCCAGCAAAAATGGGAAGCAGCAGGAAGGGCAA TGA
AA sequence Show only first row Show all	>Lus10030951 pacid=23166801 polypeptide=Lus10030951 locus=Lus10030951.g ID=Lus10030951.BGIv1.0 annot-version=v1.0 MGCGLSQLAAKFAFFPPSPPTYQIKKKDNGKLTVVSTSPSPSLPLPLPDDNSLDVLLIDTKRGNKIVAFYLRNPYARLTLLYSHGNAADLGQLYDLFVQL KLNLRVNLIGYDYSGYGASTGKPSESNTYADIEAVYQCLQTDYGVSQEDLILYGQSVGSGPTLHLAAKLPRLRGVVLHSAILSGLRVLCHVKFSFCFDIY RNIRKIQMVKSPVLVIHGTEDDVVNWLHGNGLWKLAREPYEPLWIKGGGHCNLELYPDYIRHLCRFIYEMENMTTKDHLKRVREKLRLKPRSNRRHSSSS SSSPCCRLRLWRPRCSGCFTPSCIKCHCRSKCLEGGSGCWKCCSLQWCWKPLACPKCSTPSCSCCSCSCSCSCSLASCFPSCCCCSTARASKNGKQQEGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32190			alpha/beta-Hydrolases superfam...		Lus10030951 [exp]	0	1
AT2G42810		AtPP5, PP5.2, P...	Arabidopsis thaliana protein p...		Lus10031381 [exp]	2.0	0.8159
AT2G30620			winged-helix DNA-binding trans...		Lus10042541 [exp]	3.2	0.7995
AT1G32190			alpha/beta-Hydrolases superfam...		Lus10040096 [exp]	3.5	0.7991
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Lus10031194 [exp]	21.2	0.7236
AT1G80100		AHP6	histidine phosphotransfer prot...		Lus10011487 [exp]	30.0	0.7371
AT3G63240			DNAse I-like superfamily prote...		Lus10006904 [exp]	31.6	0.7907
AT5G03450			Transducin/WD40 repeat-like su...		Lus10013821 [exp]	34.6	0.7744
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10002657 [exp]	36.3	0.7847
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008535 [exp]	40.7	0.7779
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10035183 [exp]	45.4	0.7759

Compare expression of checked genes

Lus10030951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.