Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17720 381 / 1e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G46870 337 / 3e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G16840 271 / 6e-91 BPA1 binding partner of acd11 1 (.1.2.3) AT1G67950 238 / 8e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G32450 216 / 4e-69 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G14340 156 / 3e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G01210 119 / 6e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040095 [exp] 543 / 0 AT4G17720 379 / 8e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011063 [exp] 404 / 2e-142 AT4G17720 333 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10000676 [exp] 368 / 2e-128 AT4G17720 313 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025743 [exp] 277 / 7e-93 AT4G17720 295 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10035919 [exp] 212 / 9e-68 AT4G17720 226 / 3e-73 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10010660 [exp] 192 / 4e-59 AT5G32450 352 / 3e-122 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013651 [exp] 191 / 2e-57 AT5G32450 343 / 5e-117 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030491 [exp] 159 / 4e-47 AT1G14340 300 / 1e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012843 [exp] 154 / 2e-45 AT1G14340 301 / 5e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138400 [exp] 425 / 2e-151 AT4G17720 365 / 2e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G095400 [exp] 395 / 9e-140 AT4G17720 355 / 9e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G103600 [exp] 272 / 1e-90 AT1G67950 280 / 6e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.019G037600 [exp] 202 / 1e-63 AT5G32450 400 / 2e-142 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.013G055100 [exp] 195 / 4e-61 AT5G32450 389 / 9e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081500 [exp] 153 / 3e-45 AT1G14340 239 / 6e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081400 [exp] 152 / 2e-44 AT1G14340 229 / 3e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G009800 [exp] 45 / 6e-05 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.004G177000 [exp] 42 / 0.0003 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.009G137200 [exp] 42 / 0.0005 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10030952 pacid=23166827 polypeptide=Lus10030952 locus=Lus10030952.g ID=Lus10030952.BGIv1.0 annot-version=v1.0 ATGTCGGTCAAAACTGTGAAAGTGAGTAATGTTTCTCTCAAGGCTACTGATAAGGACCTGAAGGAGTTCTTCTCCTTCTCTGGCGATATTGAATACGTCG AGATGCAAAGTGTGGATGAGAAATCTCAAGTGGGGTACGTCACTTTTAAAGATTCTCAAGGTGCAGATACTGCTGTCCTTCTTACGGGAGCAACTATAGT TGATCTTGCTGTCACCATAACATCAGATCCAGATTATAAGCTACCACAGGCTGTTCTGTTGGCAATGGAGAATGAAAATAGAAATCCAGCTGAAGCTGAC TCGGCGCTTAGGAAGGCAGAAGACGTTGTCAGCGGCATGCTAGCCAAGGGTTTCATCTTAGGGAAAGATGCTGTCAACAAAGCCAAGTCATTTGATGAAA AGCACCAACTTACTTCAACTGGGTTAGCTAAAGTTGCATCCTTTGACAAAAAGTTAGGCCTGAGTGACAAGATTACTGCTAGCACAACCGTAGTGGGGGA CAAAGTCCGCGAGGTGGACCAGAAGTATCAGGTTTCCGAGAAGACCAAGTCAGCATTTGCAGCAGCAGAGCAAAAAGTCAGCAGCGCAGGATCAGCCATA ATGAAGAACCGGTACGTGTTCACCAGCGCTGCCTGGGTAAGCGGTGCATTCAGCAAAGTCGCAAAGGCAGCCGAGGATGTAGGGCAGAAGGCCAAGGAGA AAGTAGGAATGGCTGAAGAAGAGCAAAGGAGGAAAGTTGTGGAAGACTTTGCGCAGGTCCACCTATCAGAGTCGCCAAAAATGTCTCGAAATGATCACGA GCAACAATCTGATCCGCCAAAATATCAGCAGATGTCGTCACCTCCAGACTCGCCACCTTCTAGTAAATCGCCTTCCAAGCCTGCCCCTGTTACTGGCTTG ATCCTCTGA
AA sequence Show only first row Show all	>Lus10030952 pacid=23166827 polypeptide=Lus10030952 locus=Lus10030952.g ID=Lus10030952.BGIv1.0 annot-version=v1.0 MSVKTVKVSNVSLKATDKDLKEFFSFSGDIEYVEMQSVDEKSQVGYVTFKDSQGADTAVLLTGATIVDLAVTITSDPDYKLPQAVLLAMENENRNPAEAD SALRKAEDVVSGMLAKGFILGKDAVNKAKSFDEKHQLTSTGLAKVASFDKKLGLSDKITASTTVVGDKVREVDQKYQVSEKTKSAFAAAEQKVSSAGSAI MKNRYVFTSAAWVSGAFSKVAKAAEDVGQKAKEKVGMAEEEQRRKVVEDFAQVHLSESPKMSRNDHEQQSDPPKYQQMSSPPDSPPSSKSPSKPAPVTGL IL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10030952 [exp]	0	1
AT3G62260			Protein phosphatase 2C family ...		Lus10009993 [exp]	5.7	0.7637
AT3G06330			RING/U-box superfamily protein...		Lus10012793 [exp]	6.3	0.6975
AT1G76070			unknown protein		Lus10021840 [exp]	8.9	0.7745
AT1G48300			unknown protein		Lus10009975 [exp]	9.9	0.7557
AT5G26730			Fasciclin-like arabinogalactan...		Lus10006371 [exp]	10.5	0.6938
					Lus10012792 [exp]	13.4	0.7482
AT2G46490			unknown protein		Lus10040009 [exp]	14.5	0.6952
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10003178 [exp]	15.1	0.7491
AT3G51380		IQD20	IQ-domain 20 (.1)		Lus10041844 [exp]	15.8	0.7315
AT4G21620			glycine-rich protein (.1.2)		Lus10018454 [exp]	20.2	0.6894

Compare expression of checked genes

Lus10030952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.