Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46860 345 / 1e-120 SGR3, ATVAM3, ATSYP22, VAM3 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) AT4G17730 320 / 7e-111 ATSYP23, SYP23 syntaxin of plants 23 (.1.2) AT5G16830 266 / 3e-89 ATSYP21, ATPEP12, SYP21, PEP12P syntaxin of plants 21 (.1) AT1G32270 170 / 5e-50 ATSYP24 SYNTAXIN 24, syntaxin, putative (.1) AT4G02195 47 / 9e-06 ATTLG2B, ATSYP42, SYP42 syntaxin of plants 42 (.1) AT5G26980 45 / 2e-05 ATSYP41, ATTLG2A, SYP41 syntaxin of plants 41 (.1.2) AT3G03800 45 / 2e-05 ATSYP131, SYP131 syntaxin of plants 131 (.1) AT3G05710 45 / 3e-05 ATSYP43, SYP43 syntaxin of plants 43 (.1.2) AT3G11820 45 / 3e-05 PEN1, AT-SYR1, ATSYR1, ATSYP121, SYP121 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) AT1G61290 45 / 3e-05 ATSYP124, SYP124 syntaxin of plants 124 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040094 [exp] 451 / 3e-162 AT5G46860 419 / 1e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10000311 [exp] 181 / 2e-57 AT5G46860 217 / 5e-72 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10011064 [exp] 184 / 1e-52 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10020683 [exp] 50 / 7e-07 AT3G05710 361 / 7e-126 syntaxin of plants 43 (.1.2) Lus10029864 [exp] 48 / 3e-06 AT3G05710 510 / 0.0 syntaxin of plants 43 (.1.2) Lus10015215 [exp] 47 / 7e-06 AT3G05710 223 / 3e-72 syntaxin of plants 43 (.1.2) Lus10031466 [exp] 46 / 2e-05 AT3G05710 506 / 0.0 syntaxin of plants 43 (.1.2) Lus10011244 [exp] 45 / 3e-05 AT1G61290 487 / 2e-175 syntaxin of plants 124 (.1) Lus10018441 [exp] 45 / 3e-05 AT1G61290 491 / 4e-177 syntaxin of plants 124 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138500 [exp] 395 / 4e-140 AT5G46860 377 / 3e-133 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.003G095300 [exp] 392 / 4e-139 AT5G46860 368 / 2e-129 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.014G145200 [exp] 195 / 1e-61 AT5G46860 263 / 4e-88 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.006G202200 [exp] 51 / 2e-07 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.005G020800 [exp] 51 / 3e-07 AT3G05710 462 / 1e-164 syntaxin of plants 43 (.1.2) Potri.013G011100 [exp] 49 / 1e-06 AT3G05710 457 / 7e-163 syntaxin of plants 43 (.1.2) Potri.016G068600 [exp] 47 / 4e-06 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.004G035400 [exp] 47 / 6e-06 AT1G61290 490 / 8e-177 syntaxin of plants 124 (.1) Potri.002G200400 [exp] 47 / 7e-06 AT5G26980 397 / 1e-139 syntaxin of plants 41 (.1.2) Potri.011G043700 [exp] 45 / 2e-05 AT1G61290 456 / 3e-163 syntaxin of plants 124 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10030953 pacid=23166849 polypeptide=Lus10030953 locus=Lus10030953.g ID=Lus10030953.BGIv1.0 annot-version=v1.0 ATGAGCTTTCAAGATCTAGAGGCCGGACGCCCTCTCGCCTCCCGGCGAGACCTCATCAACGGCAAGCAAGACGCCACACAGGCTGTTGCTTCCGGAATAT TCCAGATCAATACCGCCGTCTCCACTTTTCAGCGCCTCGTGAATACCCTTGGAACTCCCAAGGATACTCCTGAGCTCCGAGAGAAGCTGCACAAAACTAG GTTACACATTGGTCAGCTGGTGAAGGATACATCTGCAAGACTTAAACAAGCAAGTGATACAGATCATCATGCTGGAGTTACTCAAAGTAAGAAGATTGCT GATGCAAAACTCGCAAAGGATTTTCAAGCAGTTTTGAAAGAATTCCAGAAGGCTCAGCGTCTCTCAGCTGAGAGGGAAACAGCCTATTCACCATTTGTTG CTCAGGCCAATCTTCCTTCTAGCTACAACGGCAATGACGTAGATGCAAGTTCAGATAAAATTCCTGAAGAACGGGTTCTTCTTATGGAGACAAAAAGACA AGAAGTGGTGCTATTAGATAACGAGATCGCCTTCAATGAGGCTATCATCGAGGAAAGAGAGCAGGGAATACATGAGATTCAGCAGCAAATTGGGGAGGTG AACGAGATTTTCAAAGATCTTGCTGTCCTTGTACATGAACAAGGAACTATGATCGATGATATTGGCTCCCACATTGATAATGCACATGCTGCGACTGCAC AAGGGAGACAACAGCTGTTGAAAGCTGCAAAAACCCAGAAGTCAAACTCATCCCTGACCTGCTTACTCTTGGTCATATTCGGGATTGTTCTCCTCATCGT TATCATAGTGCTCGCAGCCTAA
AA sequence Show only first row Show all	>Lus10030953 pacid=23166849 polypeptide=Lus10030953 locus=Lus10030953.g ID=Lus10030953.BGIv1.0 annot-version=v1.0 MSFQDLEAGRPLASRRDLINGKQDATQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSARLKQASDTDHHAGVTQSKKIA DAKLAKDFQAVLKEFQKAQRLSAERETAYSPFVAQANLPSSYNGNDVDASSDKIPEERVLLMETKRQEVVLLDNEIAFNEAIIEEREQGIHEIQQQIGEV NEIFKDLAVLVHEQGTMIDDIGSHIDNAHAATAQGRQQLLKAAKTQKSNSSLTCLLLVIFGIVLLIVIIVLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Lus10030953 [exp]	0	1
AT5G13500			unknown protein		Lus10009691 [exp]	10.2	0.8983
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10011064 [exp]	15.2	0.8704
AT5G47550			Cystatin/monellin superfamily ...		Lus10017567 [exp]	23.5	0.8584
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10011841 [exp]	32.8	0.8705
AT1G73390			Endosomal targeting BRO1-like ...		Lus10031313 [exp]	33.8	0.8187
AT1G02305			Cysteine proteinases superfami...		Lus10010091 [exp]	46.0	0.8666
AT3G49420			Got1/Sft2-like vescicle transp...		Lus10025494 [exp]	49.0	0.8678
AT5G23750			Remorin family protein (.1.2)		Lus10001477 [exp]	51.7	0.8691
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025534 [exp]	52.1	0.8232
AT1G25500			Plasma-membrane choline transp...		Lus10034295 [exp]	55.7	0.8527

Compare expression of checked genes

Lus10030953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.