Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46850 118 / 4e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040093 [exp] 273 / 1e-95 AT5G46850 115 / 8e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G095200 [exp] 140 / 3e-41 AT5G46850 216 / 2e-68 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08320 [flax] [poplar] PIG-X PIG-X / PBN1
Representative CDS sequence Show only first row Show all	>Lus10030954 pacid=23166835 polypeptide=Lus10030954 locus=Lus10030954.g ID=Lus10030954.BGIv1.0 annot-version=v1.0 ATGGTTGCTATACATGAAGCTGCATATACCTGTGTCGCTGTCTTCGGAGACACAAACTTGGAGTTGCCTTCAGTGTCTTCTAACCGGTCCGCCGTTGAGA TTCACATGAATCTTGAGCACAGCATTTCTTCAGGAAGCATGACTGGTGCGGGAATCAAGGTCGATCTTCCATTGCATGCCCGTTATCCGCCATTGCATGA AAGTGGTTTCTCAAAAGTAACATTTGGTACACCGGATCTGCTCGTGTGCTGCAACGTGAAAGGAAGCTTGGACACGAGTGGATGCTTGCTTGCGCCGTAC TACAACAGCCACAAACTGAAGACTGATGCTGTATGGGAAATACCATGTGGAATTGAAAGCCATAAAAACATGGTCACAATCGTCACCTTTGCTACTGCCT TTGTATCGACCCTTGTAATTTTACTTGCATCTCTGTTTCACTTAGAACTTCGTCGTTGA
AA sequence Show only first row Show all	>Lus10030954 pacid=23166835 polypeptide=Lus10030954 locus=Lus10030954.g ID=Lus10030954.BGIv1.0 annot-version=v1.0 MVAIHEAAYTCVAVFGDTNLELPSVSSNRSAVEIHMNLEHSISSGSMTGAGIKVDLPLHARYPPLHESGFSKVTFGTPDLLVCCNVKGSLDTSGCLLAPY YNSHKLKTDAVWEIPCGIESHKNMVTIVTFATAFVSTLVILLASLFHLELRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46850			unknown protein		Lus10030954 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Lus10028669 [exp]	8.8	0.7534
					Lus10035529 [exp]	15.6	0.7415
AT4G17760			damaged DNA binding;exodeoxyri...		Lus10035367 [exp]	17.3	0.7187
AT5G08630			DDT domain-containing protein ...		Lus10029550 [exp]	21.1	0.7253
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10022657 [exp]	23.0	0.6904
AT3G03470		CYP89A9	"cytochrome P450, family 87, s...		Lus10009534 [exp]	28.5	0.6342
AT1G07950		MED22B	Surfeit locus protein 5 subuni...		Lus10023466 [exp]	36.9	0.7108
					Lus10018990 [exp]	39.7	0.7054
AT3G05675			BTB/POZ domain-containing prot...		Lus10021269 [exp]	41.3	0.7050
AT1G76405			unknown protein		Lus10025161 [exp]	54.4	0.7045

Compare expression of checked genes

Lus10030954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.