Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32330 418 / 9e-143 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 380 / 6e-128 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT5G16820 369 / 1e-123 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G02990 348 / 8e-116 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT2G26150 241 / 1e-75 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G22830 241 / 4e-75 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT5G03720 206 / 1e-61 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT1G67970 196 / 3e-58 HSF AT-HSFA8 heat shock transcription factor A8 (.1) AT3G51910 193 / 3e-58 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT4G13980 198 / 5e-58 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040091 [exp] 860 / 0 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10000312 [exp] 541 / 0 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 534 / 0 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10040911 [exp] 325 / 1e-106 AT5G16820 370 / 4e-124 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Lus10006618 [exp] 253 / 1e-79 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10039376 [exp] 247 / 1e-77 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10014698 [exp] 229 / 2e-70 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000492 [exp] 225 / 4e-69 AT3G22830 365 / 1e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10022083 [exp] 223 / 3e-68 AT3G22830 314 / 1e-104 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138900 [exp] 563 / 0 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 497 / 2e-173 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.013G079800 [exp] 360 / 3e-120 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.002G048200 [exp] 251 / 1e-79 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G226800 [exp] 251 / 4e-79 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.005G214800 [exp] 250 / 4e-79 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 248 / 3e-78 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.014G141400 [exp] 248 / 4e-77 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.010G082000 [exp] 240 / 4e-75 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G104300 [exp] 229 / 9e-71 AT1G67970 319 / 7e-107 heat shock transcription factor A8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10030956 pacid=23166717 polypeptide=Lus10030956 locus=Lus10030956.g ID=Lus10030956.BGIv1.0 annot-version=v1.0 ATGGATGAGGCATCCACTAAAGGAGATAGCCCCGACACTTTGACTACCAGTGTTGGCGGTGGAGGAGGAAAGCAGAAGGCCGGAGGAGCACGAGCAGCAC CGGTGCCGATGACTGCACAGTCTAACGTGCCGCCGCCTTTCCTTAGCAAGACGTATGACATGGTGGATGACCCTGCTTCCGACTCTATCGTGTCCTGGAG TTCCACGAATAACAGCTTCGTAGTGTGGAATCCGCCTGAGTTCGCTCGCGACCTCCTTCCCAAGTATTTCAAGCATAACAACTTCTCCAGCTTCGTTAGG CAGCTCAATACTTATGGTTTCCGGAAAGTGGATCCAGATAGATGGGAATTCGCGAATGAGGGATTCTTGAGAGGGCAAAAGCACTTGCTTAAGAGCATAA ACCGTCGGAAACCAGCACATGGACATAACCAGCAGCAAGTGCAACCATCACATGGACAGATTTCATCCGTTGCTTCTTGTGTGGAGGTTGGTAAATTTGG GCTCGAAGAGGAAGTCGAGAGGCTCAAGAGGGACAAAAATGTACTTATGCAGGAACTTGTTCGGTTAAAACAGCAGCAACAGTCTACTGATGGCCAGATG CAGACCATGGTAAAGCGGCTTCAAGGGATGGAGCAGAGGCAGCAACAAATGATGTCATTTTTGGCTAAGGCTTTGCAGAGCCCTGGATTCTTTTCTCAGT TTGTACAACAGCAAAATGAAAACAATAGGCGTATAACAGAAACTAACAAAAAACGGAGGCTCAAGCAAGACAGGACCACCGAGAATGAGTCTTCTACTGT TCCCGACGGGCAGATTGTTAAGTACCAGCCATCTACTAACGAGGCTGCAAATGTAATGCTCAGGCAGATAATGAATGGGGATTCTTCTTCGAGGTCAGAA TGTTACAACAATAGTTTTGATGGCTTCACTGGTGGCAATGTTTCATCACCCAGTGCCATAGACAGTGGAAACTCTCCAACTCGAGGATCAGTGGTTAGAC TCCAGGAAGTTCCAGCAACTTCAGGGTCAGGGGTAATGCCCGAGCTTTCTCAAATGCCGGAAATGGTTCCTGAAAGTATGAATGATGATATTCCAGGGGA CGGTTACATGGAACCAGATACAGGTGATGATTGCTTCGTACAGTCTTCATTAGGTATGGATGGAATGATACCCTTTGATCTTGGTATCATACCTCCTGAT CTTGAAGATAATCTTGATGCATTTCTATCTCGCGAGTTCTGGGATGACCTTGTCCAAAGCCCGATTCCTGATGACATCGAATCAAGTTCTATGGACAATA AAGCTTCGAGTGATGATGTACAACCAATGGAGAAGGAATGGGAGAAGACCGAGCACGTGGATCAGTTGACTGAGCAAATGGGGCATCTCTCATCAGAAGC AAAGAAGCTGCTCTAG
AA sequence Show only first row Show all	>Lus10030956 pacid=23166717 polypeptide=Lus10030956 locus=Lus10030956.g ID=Lus10030956.BGIv1.0 annot-version=v1.0 MDEASTKGDSPDTLTTSVGGGGGKQKAGGARAAPVPMTAQSNVPPPFLSKTYDMVDDPASDSIVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVR QLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSINRRKPAHGHNQQQVQPSHGQISSVASCVEVGKFGLEEEVERLKRDKNVLMQELVRLKQQQQSTDGQM QTMVKRLQGMEQRQQQMMSFLAKALQSPGFFSQFVQQQNENNRRITETNKKRRLKQDRTTENESSTVPDGQIVKYQPSTNEAANVMLRQIMNGDSSSRSE CYNNSFDGFTGGNVSSPSAIDSGNSPTRGSVVRLQEVPATSGSGVMPELSQMPEMVPESMNDDIPGDGYMEPDTGDDCFVQSSLGMDGMIPFDLGIIPPD LEDNLDAFLSREFWDDLVQSPIPDDIESSSMDNKASSDDVQPMEKEWEKTEHVDQLTEQMGHLSSEAKKLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10030956 [exp]	0	1
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10039661 [exp]	6.6	0.7868
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	8.6	0.7799
AT5G23290		PFD5, PDF5	prefoldin 5 (.1)		Lus10017381 [exp]	10.2	0.7340
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10007058 [exp]	11.1	0.7050
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031848 [exp]	13.0	0.7518
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10023425 [exp]	16.1	0.7539
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	16.3	0.7746
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10033049 [exp]	17.6	0.7369
AT2G44830			Protein kinase superfamily pro...		Lus10028208 [exp]	19.8	0.7662
AT1G13380			Protein of unknown function (D...		Lus10041447 [exp]	26.3	0.7211

Compare expression of checked genes

Lus10030956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.