Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17830 734 / 0 Peptidase M20/M25/M40 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040090 [exp] 892 / 0 AT4G17830 740 / 0.0 Peptidase M20/M25/M40 family protein (.1.2) Lus10042502 [exp] 48 / 9e-06 AT1G44820 635 / 0.0 Peptidase M20/M25/M40 family protein (.1) Lus10013848 [exp] 47 / 2e-05 AT4G38220 576 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Lus10026565 [exp] 44 / 0.0003 AT4G38220 616 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G143200 [exp] 756 / 0 AT4G17830 744 / 0.0 Peptidase M20/M25/M40 family protein (.1.2) Potri.003G091100 [exp] 746 / 0 AT4G17830 734 / 0.0 Peptidase M20/M25/M40 family protein (.1.2) Potri.002G085400 [exp] 46 / 4e-05 AT1G44820 660 / 0.0 Peptidase M20/M25/M40 family protein (.1) Potri.002G085500 [exp] 44 / 0.0001 AT1G44820 636 / 0.0 Peptidase M20/M25/M40 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07687 [flax] [poplar] M20_dimer Peptidase dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10030957 pacid=23166814 polypeptide=Lus10030957 locus=Lus10030957.g ID=Lus10030957.BGIv1.0 annot-version=v1.0 ATGGGTAGCGTGGAAGATATCCTAGGGGAACTCAACCGAGACTCATTCATCTCTCTGCTGGAGAAGGTGATCGGAGAATCAGAACATGTCCAGAACAACC CGCCGGAGCTGATCCCACAGGAGGTTAGGGTTGCGAATCACGTTCTGGAAGTCCTCCGCCCTTTCAGTACCGAGACAGGAGGAGGTCCTTTGGTCCTCAA TCATGCCTCTTACTCACCTGGCAGAAGCAATCTCATCGTTGAGTACCCTGGCACTGAGCCCGGCAAGGTCTTGTCCTTCGTCGGGATGCACATGGACGTC GTCACTGCTAATCCCTCTGACTGGGAATTTAATCCATTTTCATTGAGCATTGACGGGGACAAACTTCGCGGACGAGGGACAACTGATTGTCTGGGTCACG TTGCCCTTGTGGCTCAACTTATGAGGAAGCTGGGAGAGACGAAGCCGAAATTGAAGTCCACCGTTGTTGCTGTTTTCATAGCTAGTGAAGAGAACTCGTC CATAACAGGGATTGGAGTTGACCAACTTGTGAAGAATGGGCTTCTTGAGAAGCTGAAAACTGGACCTCTATACTGGATTGATACAGCTGATAAACAGCCC TGCATTGGTACTGGTGGTATGATACCATGGAAAATTCACGTGACTGGGAAACTTTTCCACAGTGGCCTACCTCACAAGGCCATAAACGCTTTGGAGTTAG GCATGGAGGCAATTAAAGAGATACAGTCGCGCTTTTATAAGGACTTCCCAGCTCATCCCAAGGAGAAAGTTTATAGATTCGCTACACCATCAACAATGAA ACCAACACAATGGAATTATCCTGTAGGTGGTATCAATCAAATTCCAGGAGAATGTACAGTTTCTGGGGACGTCAGGTTAACTCCCTTTTACAATGTATCA GATGTTATCAAGAACCTGCAAAAGTATGTAGATGACATAAATGAGAACATAGAGAAGCTAGATACCCGCGGTCCAGTTTCGAAGTATGTTCTGCCAGATG AGAACTTGAGAGGGAGACTTGTTATATCCTTCGATGAAGCAACTTCAGGAGTTGCATGTGATCTCGACTCTCGCGGCTTTCATGTGCTGTGCAAAGCAAC AGAGAAGGTAGTCGGCCATGTAGAGCCCTACTCTATCACTGGAAGTTTGCCACTGATACGCGAATTGCAGGAGGAAGGTTTTGATGTTCAAACTGCAGGC TACGGCTTGATGGCAACATACCACGCCAAGAACGAGTACTGCCTGTTCTCTGATATGGCTCAAGGCTACAGGATTTTCACCAGCATCATCTCTCAGCTGG AAGATTAG
AA sequence Show only first row Show all	>Lus10030957 pacid=23166814 polypeptide=Lus10030957 locus=Lus10030957.g ID=Lus10030957.BGIv1.0 annot-version=v1.0 MGSVEDILGELNRDSFISLLEKVIGESEHVQNNPPELIPQEVRVANHVLEVLRPFSTETGGGPLVLNHASYSPGRSNLIVEYPGTEPGKVLSFVGMHMDV VTANPSDWEFNPFSLSIDGDKLRGRGTTDCLGHVALVAQLMRKLGETKPKLKSTVVAVFIASEENSSITGIGVDQLVKNGLLEKLKTGPLYWIDTADKQP CIGTGGMIPWKIHVTGKLFHSGLPHKAINALELGMEAIKEIQSRFYKDFPAHPKEKVYRFATPSTMKPTQWNYPVGGINQIPGECTVSGDVRLTPFYNVS DVIKNLQKYVDDINENIEKLDTRGPVSKYVLPDENLRGRLVISFDEATSGVACDLDSRGFHVLCKATEKVVGHVEPYSITGSLPLIRELQEEGFDVQTAG YGLMATYHAKNEYCLFSDMAQGYRIFTSIISQLED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17830			Peptidase M20/M25/M40 family p...		Lus10030957 [exp]	0	1
AT1G14220			Ribonuclease T2 family protein...		Lus10027978 [exp]	2.8	0.9073
AT2G14095			unknown protein		Lus10010746 [exp]	3.0	0.9225
AT5G12950			Putative glycosyl hydrolase of...		Lus10031258 [exp]	3.2	0.9184
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10033905 [exp]	3.7	0.9015
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10025002 [exp]	6.6	0.8833
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10024085 [exp]	10.8	0.8818
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10017466 [exp]	12.4	0.8912
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10012106 [exp]	14.0	0.9097
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10003925 [exp]	14.8	0.8680
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010436 [exp]	14.8	0.8464

Compare expression of checked genes

Lus10030957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.