Plant FIBer expression Database

Lus10030958 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35260 389 / 5e-134 unknown protein
AT4G17840 369 / 2e-125 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040089
[exp]
463 / 2e-163 AT2G35260 354 / 4e-121 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G143400
[exp]
426 / 8e-149 AT2G35260 421 / 1e-146 unknown protein
PFAM info
Representative CDS sequence
>Lus10030958 pacid=23166745 polypeptide=Lus10030958 locus=Lus10030958.g ID=Lus10030958.BGIv1.0 annot-version=v1.0
ATGGCGATGCCGCTGGTTTCTCGGAGTCCAAGTCAAGCGACTACGGCGGCGGGGTCGTCGTCGTCTACTTTCAGCGGCAGGGTTGTTGGCCGCGCAAGTT
CGGTAGCGTTCACTGATTTCCCGACGACAAGGAGGAGGAAGATGGGGTTGAACTTGAGGGGCGGGAGGAGGGGGGGGGTAGGAGGTAAAGAGAGCAGGAA
TTCAATATGTCACGTGGTTAGAATTTCTGCGGAGAGGAGTAGCGAAGGGATAAACCCGACGGATAGCGGCGGCGGCAGTAGTAGCGGAGGGGTTGGTGGA
GGTTTCACGGGAGGTGCGATGGAGGTTACCACATTCGATCGGAGCTTCGGCGAAGCTGAACAGTTTCCAGTATGGGAGAAGATTGGTGCCGTTGTTCGGC
TGAGTTACGGTATCGGTATATATGGAGCTATGGGTTTAGCTGGAAAATTCATCTGCTCCTTCACTGGAATTGATAGCATGGGAGGATTCGATCCATCGTT
GGATGCTATTCTTAATGGACTTGGATATGCTGCTCCTCCAATCATGGCTCTCCTGTTCATATTAGATGATGAAGTAGTGAAGGTGTCTCCTCATGCTCGT
GCCATCAGAGATGTCGAGGATGAGGAACTTAGAAACTTCTTCTATGGAATGTCTCCATGGCAGTTTGTCTTAATTGTTGCTGCAAGTTCTGTGGGCGAGG
AGCTTTTCTACCGTGCTGCAGTGCAGGGAGCTCTGGCTGATATGTTTTTGAAGAGCACAAGTATGGCTACAAATGCTCAAGGAATGGTGTCCTTGGCTGG
TGTGTTGCCTCCGCTTGTTCCATTTGCACAGGCTTTCGCAGCTGCAGTTACTGCTGCTCTTACCGGCTTCCTGTATTACGTCTCCTCCTCTCCTAAAGAC
CCTATCTACGTGGTTGCCCCAGTCTTGCCGTCTCGCTCTGGACGTGGGGATCTGAAACGACTCTTTGCAGCTTGGTACGAGAGGCGGCAGATGAGAAAGA
TTTACTCTCCCCTCCTGGAAGGGCTCTTGTCATTGTACCTTGGTTACGAATGGATACAGACGAACAACATTCTTGCACCAATGATTACCCACGGTATATA
TTCCACGGTGGTTTTGGGGCATGGTTTGTGGAAGATACATGACCACCGGAAACGACTCCGCCATAGAATCTTGCAGCTTAAATCAGAGAGAAGAAAGATC
CAATAA
AA sequence
>Lus10030958 pacid=23166745 polypeptide=Lus10030958 locus=Lus10030958.g ID=Lus10030958.BGIv1.0 annot-version=v1.0
MAMPLVSRSPSQATTAAGSSSSTFSGRVVGRASSVAFTDFPTTRRRKMGLNLRGGRRGGVGGKESRNSICHVVRISAERSSEGINPTDSGGGSSSGGVGG
GFTGGAMEVTTFDRSFGEAEQFPVWEKIGAVVRLSYGIGIYGAMGLAGKFICSFTGIDSMGGFDPSLDAILNGLGYAAPPIMALLFILDDEVVKVSPHAR
AIRDVEDEELRNFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADMFLKSTSMATNAQGMVSLAGVLPPLVPFAQAFAAAVTAALTGFLYYVSSSPKD
PIYVVAPVLPSRSGRGDLKRLFAAWYERRQMRKIYSPLLEGLLSLYLGYEWIQTNNILAPMITHGIYSTVVLGHGLWKIHDHRKRLRHRILQLKSERRKI
Q

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G35260 unknown protein Lus10030958
[exp]
0 1
AT2G35260 unknown protein Lus10040089
[exp]
1.0 0.9616
AT3G21870 CYCP2;1 cyclin p2;1 (.1) Lus10039697
[exp]
5.9 0.9302
AT5G66190 ATLFNR1 ferredoxin-NADP\(+\)-oxidoredu... Lus10028451
[exp]
6.0 0.9426
AT1G07540 MYB TRFL2 TRF-like 2 (.1) Lus10024385
[exp]
6.5 0.9119
AT2G46100 Nuclear transport factor 2 (NT... Lus10007918
[exp]
8.5 0.9204
AT5G61410 RPE, EMB2728 EMBRYO DEFECTIVE 2728, D-ribul... Lus10001653
[exp]
8.7 0.9110
AT1G18060 unknown protein Lus10017999
[exp]
8.7 0.9357
AT5G66190 ATLFNR1 ferredoxin-NADP\(+\)-oxidoredu... Lus10041904
[exp]
12.3 0.9322
AT5G42070 unknown protein Lus10023063
[exp]
12.5 0.9280
AT3G50820 OEC33, PSBO2, P... OXYGEN EVOLVING COMPLEX SUBUNI... Lus10016783
[exp]
13.7 0.9243

Lus10030958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.