Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040088 [exp] 76 / 4e-18 AT1G32560 91 / 1e-24 Late Embryogenesis Abundant 4-1, Late embryogenesis abundant protein, group 1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G090501 [exp] 40 / 0.0001 AT1G32560 75 / 2e-18 Late Embryogenesis Abundant 4-1, Late embryogenesis abundant protein, group 1 protein (.1) Potri.001G143700 [exp] 39 / 0.0002 AT1G32560 49 / 2e-08 Late Embryogenesis Abundant 4-1, Late embryogenesis abundant protein, group 1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03760 [flax] [poplar] LEA_1 Late embryogenesis abundant (LEA) group 1
Representative CDS sequence Show only first row Show all	>Lus10030959 pacid=23166768 polypeptide=Lus10030959 locus=Lus10030959.g ID=Lus10030959.BGIv1.0 annot-version=v1.0 ATGCAGAGCGCAAAGCAGAAGATCAGCAACATAGCCAGCGCTGCTAAGGAACGCATCACCATTTGCACCGCTAAAGCTGAAGAACAGGCTGAGAAAGCGA CGGCGACGACCTCAGAGGAAAGGGAGATAGCCAAGGAGAGGAGGAAGGCCAAGGAAGCCAAAGCCAAGATGGAGCTTCACGAGGCCAAAGCTCGTCACGC TGCTCAGAAATTGACTTCCAGGAATCACCGTTATGGAGCCACAGCCGCCACCGGAGTTCACAACCCGGTCGTCGGCGGTCATCGTCATCATCATGGTGTC CATGATCCTGCCGTTACGGGTACGGGGTTGGGTGCACCGCCGACTGCTGCTGTAACCGGAGGTAGCTCCAGCACCGGTTCAGGCTTACCCGCCAACGGTG ACGCAGTACCCTGCTGCTCCTGGTCACCACATCATCTAAAGTCTAATGTAGCCTTGTTTTATGGTGTTATTTCCTTTCTTTTTTTTCTGCGTGTATCATT GTTAATATACCATACTGGTGGATTTTGGTGCTTATATATGTAA
AA sequence Show only first row Show all	>Lus10030959 pacid=23166768 polypeptide=Lus10030959 locus=Lus10030959.g ID=Lus10030959.BGIv1.0 annot-version=v1.0 MQSAKQKISNIASAAKERITICTAKAEEQAEKATATTSEEREIAKERRKAKEAKAKMELHEAKARHAAQKLTSRNHRYGATAATGVHNPVVGGHRHHHGV HDPAVTGTGLGAPPTAAVTGGSSSTGSGLPANGDAVPCCSWSPHHLKSNVALFYGVISFLFFLRVSLLIYHTGGFWCLYM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10030959 [exp]	0	1
					Lus10004778 [exp]	6.9	0.8579
					Lus10023010 [exp]	11.0	0.8508
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	12.8	0.8550
					Lus10028090 [exp]	13.1	0.8119
					Lus10014515 [exp]	13.4	0.8349
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030085 [exp]	15.5	0.8152
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037733 [exp]	15.8	0.8166
AT2G45910			U-box domain-containing protei...		Lus10017798 [exp]	15.9	0.8461
AT5G38260			Protein kinase superfamily pro...		Lus10027119 [exp]	17.1	0.8142
					Lus10007802 [exp]	17.7	0.8363

Compare expression of checked genes

Lus10030959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.