Plant FIBer expression Database

Lus10030960 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17960 136 / 2e-41 unknown protein
AT5G46620 114 / 1e-32 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040087
[exp]
246 / 1e-84 AT4G17960 134 / 1e-40 unknown protein
Lus10000314
[exp]
97 / 6e-27 AT4G17960 74 / 2e-18 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G143600
[exp]
152 / 1e-47 AT4G17960 164 / 1e-52 unknown protein
Potri.003G090600
[exp]
150 / 7e-47 AT4G17960 151 / 2e-47 unknown protein
PFAM info
Representative CDS sequence
>Lus10030960 pacid=23166857 polypeptide=Lus10030960 locus=Lus10030960.g ID=Lus10030960.BGIv1.0 annot-version=v1.0
ATGCGATTCTTTAGAAGATTAGCCGGCATCCTCGGATTAGTTAGAGAAGAAGGCGACCACGATGTGAAACATCATCACGAAGAAGAAGAAGAAGAAGAAC
AAGAAGGACAAGGAGACGAAGCAGAGCAATACATCCCTCAATCGCGTTCTACTTCTGGTTTCCATCCAACCGGCTTACCACGTAAAGGCTTCAGTGTCCC
TGTCCAGGTCCCCGTCGATCGCCAACACCCTGGCCCTGTTCTCTTGCCCTGCAAGTCTGGCGATGGCGGCGTCCAGGGGCTAAAGTGGTACGCAAAGCGC
CTTAAGGTAGACGAAGATGGAGACGTGGCCGATGAGTTCCTCGAGGAGACTACGTCCTCCAACCCCGTGGAGCAACGCATGCCATCATTGCCAAGGTTTG
AAGCGAAACTCAGCGTCCGTCAAGCCAAAGTTAAGAGGCAAGTAATGTCCAATGACGGGAAATTCCAACACTTGATTGAATATCAAGGCAGAAGGCGGCT
TGTATGA
AA sequence
>Lus10030960 pacid=23166857 polypeptide=Lus10030960 locus=Lus10030960.g ID=Lus10030960.BGIv1.0 annot-version=v1.0
MRFFRRLAGILGLVREEGDHDVKHHHEEEEEEEQEGQGDEAEQYIPQSRSTSGFHPTGLPRKGFSVPVQVPVDRQHPGPVLLPCKSGDGGVQGLKWYAKR
LKVDEDGDVADEFLEETTSSNPVEQRMPSLPRFEAKLSVRQAKVKRQVMSNDGKFQHLIEYQGRRRLV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G17960 unknown protein Lus10030960
[exp]
0 1
AT5G60620 GPAT9 glycerol-3-phosphate acyltrans... Lus10014443
[exp]
1.4 0.8578
AT3G10300 Calcium-binding EF-hand family... Lus10018041
[exp]
4.0 0.8278
AT3G62470 Pentatricopeptide repeat (PPR)... Lus10015741
[exp]
4.2 0.8313
AT4G00550 DGD2 digalactosyl diacylglycerol de... Lus10040927
[exp]
5.3 0.8159
AT5G38060 unknown protein Lus10004070
[exp]
5.8 0.8419
AT2G16365 F-box family protein (.1.2.3.4... Lus10040438
[exp]
6.2 0.7789
AT3G13620 Amino acid permease family pro... Lus10034046
[exp]
12.0 0.8216
AT4G20740 EMB3131 EMBRYO DEFECTIVE 3131, Pentatr... Lus10016361
[exp]
19.4 0.7399
AT2G01060 GARP myb-like HTH transcriptional r... Lus10038734
[exp]
21.3 0.7884
AT3G05675 BTB/POZ domain-containing prot... Lus10033220
[exp]
21.4 0.8093

Lus10030960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.