Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46630 797 / 0 Clathrin adaptor complexes medium subunit family protein (.1.2) AT1G60780 328 / 4e-109 HAP13 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) AT1G10730 323 / 7e-107 Clathrin adaptor complexes medium subunit family protein (.1) AT4G24550 255 / 2e-80 Clathrin adaptor complexes medium subunit family protein (.1.2.3) AT1G56590 137 / 4e-36 ZIP4 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040086 [exp] 843 / 0 AT5G46630 853 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10004626 [exp] 328 / 4e-109 AT1G60780 827 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10026688 [exp] 320 / 1e-105 AT1G60780 813 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10042083 [exp] 317 / 1e-104 AT1G60780 779 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10018088 [exp] 295 / 2e-92 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10024548 [exp] 235 / 2e-72 AT4G24550 804 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10003537 [exp] 224 / 7e-68 AT4G24550 785 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10000107 [exp] 210 / 4e-64 AT1G60780 572 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10031432 [exp] 143 / 3e-38 AT1G56590 705 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G090800 [exp] 815 / 0 AT5G46630 831 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.001G143800 [exp] 807 / 0 AT5G46630 816 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.010G044700 [exp] 330 / 1e-109 AT1G60780 834 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.008G187600 [exp] 328 / 3e-109 AT1G60780 831 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.002G105100 [exp] 240 / 1e-74 AT4G24550 817 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.005G010600 [exp] 134 / 4e-35 AT1G56590 716 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.013G006400 [exp] 130 / 2e-33 AT1G56590 712 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.002G105050 [exp] 98 / 6e-24 AT4G24550 299 / 9e-102 Clathrin adaptor complexes medium subunit family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0448 [flax] [poplar] Cargo_bd_muHD PF00928 [flax] [poplar] Adap_comp_sub Adaptor complexes medium subunit family
Representative CDS sequence Show only first row Show all	>Lus10030961 pacid=23166765 polypeptide=Lus10030961 locus=Lus10030961.g ID=Lus10030961.BGIv1.0 annot-version=v1.0 ATGCCGGTAGCTGCTTCAGCTCTCTATTTCTTGAACCTCCGCGGCGATGTCCTCATCAATCGTCTCTACCGTGACGATGTTGGGGGAAATATGGTTGATG CGTTCCGGATGCATATTATGCAGACGAAGGAACTTGGGACATGCCCTGTGCGTCAAATTGGAGGCTGTTCATTCTTTTATATGAGGATCAGCAACGTCTA CATTGTAGTTGTAGTTAGCAGCAATGCTAATGTTGCTTGTGCATTTAAATTTGTGGTAGAGGCTGTTGCACTATTCAAGTCATACTTTGGTGGTGCATTT GATGAAGATGCTATCCGAAATAATTTTGTTTTGATATACGAGTTGCTTGATGAGATCATGGACTTTGGATATCCACAGAATCTGTCTCCTGAGATATTAA AGTTATACATTACTCAGGAAGGAGTGCGATCACCATTTTCATCCAAGCAAGCTTTGGATAAGCCTGTACCAAATGCCACATTGCAAGTTACAGGGGCTGT TGGTTGGCGAAGGGAAGGACTCGTTTTCTTGGATATTGTGGAAAGTGTTAATCTTCTTATGTCCTCCAAAGGTAGTGTACTACGTTGTGATGTAACTGGG AAGATTCTGATGAAGTGCTTCCTCTCCGGGATGCCTGATTTGAAGTTGGGTTTAAATGATAAAATTGGCCTTGAAAAAGAGTCACAACTCAAGAACCGTC CCACTAAAAGTGGTAAAACAATTGAGCTTGATGATGTTACTTTTCATCAATGTGTGAACTTAACAAGGTTCAACTCGGAGAAGACCGTTAGTTTTGTTCC ACCTGATGGTGAATTTGAATTGATGAAGTACCGTATCACAGAGGGGGTTAACCTACCATTCAGGGTATTACCAACCATTAAGGAACATGGTCGAACACGT ATGGAAGTGAATGTTAAGGTTAAGAGTGTTTTTGGTGCAAAAATGTTTGCTCTTGGTGTGGTTATCAAAATTCCTGTACCAAAACAAACAGCTAAAACAA GCTTCCAAGTGACGTCAGGACGGGCAAAGTACAATGCGTCAATTGATTGCTTGGTCTGGAAGATAAAGAAGTTTCCTGGTCAGACTGAGCCAACCTTGAG TGCAGAAGTTGAGTTGATTTCTACAATTGCAGATAAGAAGTCTTGGACAAGACCGCCAATTCAAATGGAATTCCAGGTCCCCATGTTTACAGCATCTGGA TTGCGTGTCCGATTTCTTAAGGTGTGGGAGAAGAGTGGTTACAACACCGTCGAGTGGGTTCGTTACATTACAAAAGCAGGATCGTATGAGATTAGGTGCT AG
AA sequence Show only first row Show all	>Lus10030961 pacid=23166765 polypeptide=Lus10030961 locus=Lus10030961.g ID=Lus10030961.BGIv1.0 annot-version=v1.0 MPVAASALYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVVVVSSNANVACAFKFVVEAVALFKSYFGGAF DEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKQALDKPVPNATLQVTGAVGWRREGLVFLDIVESVNLLMSSKGSVLRCDVTG KILMKCFLSGMPDLKLGLNDKIGLEKESQLKNRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKEHGRTR MEVNVKVKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIKKFPGQTEPTLSAEVELISTIADKKSWTRPPIQMEFQVPMFTASG LRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46630			Clathrin adaptor complexes med...		Lus10030961 [exp]	0	1
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10043222 [exp]	1.4	0.9014
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10043432 [exp]	1.4	0.8953
AT4G21160		ZAC, AGD12	ARF-GAP domain 12, Calcium-dep...		Lus10038539 [exp]	3.0	0.8308
AT2G32240			unknown protein		Lus10003812 [exp]	4.0	0.8554
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10005191 [exp]	6.3	0.8447
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10021796 [exp]	7.0	0.8337
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	10.4	0.8341
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007887 [exp]	10.4	0.8739
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10035010 [exp]	14.4	0.8041
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10037049 [exp]	15.2	0.7950

Compare expression of checked genes

Lus10030961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.