Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46640 209 / 1e-63 AT-hook AT hook motif DNA-binding family protein (.1) AT4G17950 202 / 8e-61 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 177 / 6e-52 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT4G12080 151 / 5e-42 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G25320 148 / 2e-40 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63470 141 / 4e-38 AT-hook AT hook motif DNA-binding family protein (.1) AT4G22770 140 / 4e-38 AT-hook AT hook motif DNA-binding family protein (.1) AT3G61310 135 / 2e-36 AT-hook AT hook motif DNA-binding family protein (.1) AT4G00200 135 / 3e-36 AT-hook AT hook motif DNA-binding family protein (.1) AT2G45850 130 / 2e-34 AT-hook AT hook motif DNA-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040085 [exp] 588 / 0 AT4G17950 241 / 9e-76 AT hook motif DNA-binding family protein (.1) Lus10011067 [exp] 354 / 7e-121 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10000315 [exp] 353 / 2e-120 AT2G33620 228 / 4e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10037858 [exp] 157 / 2e-44 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10030381 [exp] 157 / 2e-44 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10004022 [exp] 148 / 8e-41 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10008533 [exp] 147 / 2e-40 AT1G63470 292 / 7e-97 AT hook motif DNA-binding family protein (.1) Lus10030269 [exp] 145 / 6e-40 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10008535 [exp] 145 / 1e-39 AT1G63470 296 / 3e-98 AT hook motif DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G143500 [exp] 315 / 3e-105 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.003G090900 [exp] 309 / 6e-103 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.002G005000 [exp] 188 / 6e-56 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.002G158200 [exp] 174 / 3e-51 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.014G082100 [exp] 172 / 3e-50 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.005G256500 [exp] 166 / 2e-47 AT2G33620 196 / 2e-59 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.012G129500 [exp] 161 / 4e-46 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.001G115800 [exp] 159 / 1e-45 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.001G104900 [exp] 159 / 5e-45 AT1G63470 281 / 1e-92 AT hook motif DNA-binding family protein (.1) Potri.002G148600 [exp] 155 / 4e-44 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10030962 pacid=23166877 polypeptide=Lus10030962 locus=Lus10030962.g ID=Lus10030962.BGIv1.0 annot-version=v1.0 ATGGACTCCAAACCACCGCAGCACATGCTGCATCCGTCGCATCATCATGATCTCAACCACCACCACCACCACAATCACCACCCGCTGAACCACAACCACC ACCACCAACACCAGCACCAGCACCAGCACCAGCAGCAAGCGCACGCACCAAACATGATGCTAGGTCCCGCTCATCTCTACCCTACGATGATTAACCCAAA CGTCCCTTCCGGAGTCGGAGCCGGCGGATTCCCGTTCAATTCCATGCCCATACGCCCCCAATCGAAGCCCCCTACTACATCTGACGTCGGGGGGATGAAC CCCGGCTCGTTCGACGGATCGTCGCCTACCTCTTCAGGAATGAGGTTTAGCATCGAGCCTGCTAAGAAGAAGCGCGGGAGGCCGAGGAAGTACGCTCCCG AAGGCAACATTGCTCTCGGCTTGTCCCCGACAACTCCGATTTCTTCTTCGGTAGGTCAGGGGGAGCCCGGTGCTCCTGCTTCTTTGTCGTCGTCGGACAA TACTGCTAAGAAGCATAGAGGGAGGCCGCCGGGGTCTGTCAAGAGGCAGCTTGATGCCTTAGGAGGAGTTGGAGGAGTGGGATTTACGCCTCATGTAATC TTCGTGAAAACTGGCGAGGATATTGCATCGAAGATTTATACTTTTTCACAGCAGGGTCCAAGAACTGTATGTATTCTCTCAGGAAATGGGGCCATATCCA AAGTTACCCTCCGCCAACCTGCTTCTGGTGGCACAGTGACATACGAGGGGAGTTATGAGATAATTTCATTAACAGGCTCTGTGTGGCTTTCTGAAAATGA TGGTAATAGAAGTAGAAATGGTGGTTTGACTGTTTCTCTGGCCGGAATAGATGGCCGAGTTTTGGGTGGTGGAGTGGCTGGAATATTGGTGGCAGCGTCA CCAGTCCAGGTTATCGTGGGCAGCTTTGTTGCTGAGGGGAGAAAGCCGACTCCAGAGGAATCAGCATCCGGACCGTCCTTGCCACCTGCAACCCACATGT TGAATTTTGGTGCACCAATGTCAGCACCTAGTCCTCTTTTCCAAGCGCCTTCGAGCGAATCTTCGGACGACCATGGTAGTAGCCCCTTAAACAACAAGGG AGCTGGAATGTACGGCAATGCCGATCAAGAGCCCCTCCACAGTATGCAAATGTACCATGTACTGGCTGGCCAAGACCCTCAATGA
AA sequence Show only first row Show all	>Lus10030962 pacid=23166877 polypeptide=Lus10030962 locus=Lus10030962.g ID=Lus10030962.BGIv1.0 annot-version=v1.0 MDSKPPQHMLHPSHHHDLNHHHHHNHHPLNHNHHHQHQHQHQHQQQAHAPNMMLGPAHLYPTMINPNVPSGVGAGGFPFNSMPIRPQSKPPTTSDVGGMN PGSFDGSSPTSSGMRFSIEPAKKKRGRPRKYAPEGNIALGLSPTTPISSSVGQGEPGAPASLSSSDNTAKKHRGRPPGSVKRQLDALGGVGGVGFTPHVI FVKTGEDIASKIYTFSQQGPRTVCILSGNGAISKVTLRQPASGGTVTYEGSYEIISLTGSVWLSENDGNRSRNGGLTVSLAGIDGRVLGGGVAGILVAAS PVQVIVGSFVAEGRKPTPEESASGPSLPPATHMLNFGAPMSAPSPLFQAPSSESSDDHGSSPLNNKGAGMYGNADQEPLHSMQMYHVLAGQDPQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Lus10030962 [exp]	0	1
AT2G40070			unknown protein		Lus10037838 [exp]	5.9	0.8431
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10024850 [exp]	11.6	0.8325
AT5G06940			Leucine-rich repeat receptor-l...		Lus10011302 [exp]	11.8	0.8450
AT4G35240			Protein of unknown function (D...		Lus10012276 [exp]	13.0	0.8664
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10012162 [exp]	13.9	0.8646
AT5G06940			Leucine-rich repeat receptor-l...		Lus10040500 [exp]	18.0	0.8452
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Lus10016804 [exp]	18.7	0.8171
AT3G24460			Serinc-domain containing serin...		Lus10017728 [exp]	18.7	0.8121
AT3G01810			unknown protein		Lus10037001 [exp]	19.5	0.8289
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10039569 [exp]	22.4	0.8280

Compare expression of checked genes

Lus10030962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.