Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52270 304 / 6e-105 Transcription initiation factor IIF, beta subunit (.1) AT1G75510 274 / 4e-93 Transcription initiation factor IIF, beta subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040084 [exp] 480 / 3e-174 AT3G52270 322 / 3e-111 Transcription initiation factor IIF, beta subunit (.1) Lus10023502 [exp] 430 / 3e-153 AT3G52270 294 / 4e-99 Transcription initiation factor IIF, beta subunit (.1) Lus10040384 [exp] 326 / 1e-113 AT3G52270 226 / 9e-74 Transcription initiation factor IIF, beta subunit (.1) Lus10033190 [exp] 305 / 4e-105 AT1G75510 352 / 4e-123 Transcription initiation factor IIF, beta subunit (.1) Lus10010631 [exp] 304 / 1e-104 AT1G75510 350 / 2e-122 Transcription initiation factor IIF, beta subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G219800 [exp] 338 / 2e-118 AT3G52270 295 / 1e-100 Transcription initiation factor IIF, beta subunit (.1) Potri.002G028900 [exp] 324 / 5e-113 AT1G75510 346 / 5e-121 Transcription initiation factor IIF, beta subunit (.1) Potri.005G233800 [exp] 323 / 1e-112 AT1G75510 354 / 3e-124 Transcription initiation factor IIF, beta subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02270 [flax] [poplar] TFIIF_beta TFIIF, beta subunit HTH domain
Representative CDS sequence Show only first row Show all	>Lus10030963 pacid=23166700 polypeptide=Lus10030963 locus=Lus10030963.g ID=Lus10030963.BGIv1.0 annot-version=v1.0 ATGAAATGCCCTTCTCTAGTTTCTCACTCCCTCCGCTCCCCTTTGTCCGATGACCTTTCTGCTCCCGTCGCCAAAGTCATCGTCTCCGTCGACCCTCTTA ACTCCAATGCCGATGATTCCTCTACCCAGTTCACAATGGAGTTGGCTGTGACTGAATCGGGGAATACACCCAAATCATACACTCTAGCAATGTCTAAGGA CTTTGTTCCAATGTCTGTATTTGCTGAGACATCTCAAGGAAAGGTGTTTGTGGAGGGGAAGATACTGAACAAATTCGACGTGAAGCCCCATTCTGAGAAT CTTGAAAAGTATGGAAAACTATGTCGTGAAAGGACAAAGAAGTATATGAACAAGAACAGACAAGTCCAGGTGATTGATAATGACAATGGAACTCACATGA GGCCTATGCCTGGGATGATGACAACTTCTTTCTCCACCGTACATGAAAAGAAGAAACCGCCGGCCAAAGCATCTGATACGAAAAGGACGAGAAGGGATCG GGGAGAGATGGAAGACATTATGTTCAAGCTATTTGAAAGACAACCTAATTGGACTTTAAAACAACTTATTCAGGAAACAGACCAGCCTGAACTGTTTCTG AAAGACATACTGAAGGAGCTTTGTGTGTACAACAACAAGGGCAGTAACCAAGGATCCTATGAGCTGAAGCCAGAATACACGAAATCAAGTGAGGATCCAG CAAAATCATAA
AA sequence Show only first row Show all	>Lus10030963 pacid=23166700 polypeptide=Lus10030963 locus=Lus10030963.g ID=Lus10030963.BGIv1.0 annot-version=v1.0 MKCPSLVSHSLRSPLSDDLSAPVAKVIVSVDPLNSNADDSSTQFTMELAVTESGNTPKSYTLAMSKDFVPMSVFAETSQGKVFVEGKILNKFDVKPHSEN LEKYGKLCRERTKKYMNKNRQVQVIDNDNGTHMRPMPGMMTTSFSTVHEKKKPPAKASDTKRTRRDRGEMEDIMFKLFERQPNWTLKQLIQETDQPELFL KDILKELCVYNNKGSNQGSYELKPEYTKSSEDPAKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52270			Transcription initiation facto...		Lus10030963 [exp]	0	1
AT1G76860			Small nuclear ribonucleoprotei...		Lus10026326 [exp]	5.1	0.8427
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10036442 [exp]	5.8	0.8514
AT1G66930			Protein kinase superfamily pro...		Lus10022367 [exp]	8.5	0.8240
AT2G31140			Peptidase S24/S26A/S26B/S26C f...		Lus10022921 [exp]	9.5	0.8328
AT3G01800			Ribosome recycling factor (.1)		Lus10035226 [exp]	14.1	0.7973
AT4G03415			Protein phosphatase 2C family ...		Lus10018570 [exp]	14.3	0.7857
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Lus10017135 [exp]	17.9	0.8227
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10014439 [exp]	18.7	0.7710
AT3G05760	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10010928 [exp]	19.9	0.8223
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001923 [exp]	24.9	0.8131

Compare expression of checked genes

Lus10030963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.