Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17800 149 / 4e-44 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G35270 149 / 7e-44 AT-hook GIK, 2-ATH, AHL21 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) AT3G04570 117 / 2e-31 AT-hook AHL19 AT-hook motif nuclear-localized protein 19 (.1) AT4G14465 108 / 1e-28 AT-hook AHL20 AT-hook motif nuclear-localized protein 20 (.1) AT2G42940 107 / 3e-28 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G45430 107 / 1e-27 AT-hook AHL22 AT-hook motif nuclear-localized protein 22 (.1) AT4G12050 107 / 2e-27 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G22810 105 / 6e-27 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT3G60870 96 / 7e-24 AT-hook AHL18 AT-hook motif nuclear-localized protein 18 (.1) AT3G55560 95 / 3e-23 AT-hook AHL15, AGF2 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020763 [exp] 123 / 4e-34 AT2G42940 294 / 1e-100 Predicted AT-hook DNA-binding family protein (.1) Lus10006577 [exp] 117 / 2e-31 AT3G04570 270 / 1e-89 AT-hook motif nuclear-localized protein 19 (.1) Lus10000519 [exp] 113 / 5e-30 AT2G35270 205 / 1e-64 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) Lus10031460 [exp] 108 / 3e-29 AT2G42940 214 / 1e-70 Predicted AT-hook DNA-binding family protein (.1) Lus10002711 [exp] 109 / 2e-28 AT4G14465 211 / 1e-66 AT-hook motif nuclear-localized protein 20 (.1) Lus10042551 [exp] 106 / 1e-27 AT3G04570 202 / 4e-64 AT-hook motif nuclear-localized protein 19 (.1) Lus10031458 [exp] 102 / 5e-27 AT2G42940 212 / 1e-69 Predicted AT-hook DNA-binding family protein (.1) Lus10022010 [exp] 100 / 3e-25 AT4G14465 198 / 7e-63 AT-hook motif nuclear-localized protein 20 (.1) Lus10009301 [exp] 96 / 2e-23 AT3G60870 223 / 4e-72 AT-hook motif nuclear-localized protein 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G091300 [exp] 155 / 4e-46 AT4G17800 315 / 4e-108 Predicted AT-hook DNA-binding family protein (.1) Potri.001G142800 [exp] 153 / 2e-45 AT4G17800 300 / 6e-102 Predicted AT-hook DNA-binding family protein (.1) Potri.005G202700 [exp] 118 / 3e-32 AT2G42940 305 / 3e-105 Predicted AT-hook DNA-binding family protein (.1) Potri.002G059400 [exp] 118 / 4e-32 AT2G42940 311 / 2e-107 Predicted AT-hook DNA-binding family protein (.1) Potri.010G074201 [exp] 116 / 2e-31 AT4G14465 256 / 3e-85 AT-hook motif nuclear-localized protein 20 (.1) Potri.013G044500 [exp] 115 / 4e-31 AT4G14465 162 / 3e-48 AT-hook motif nuclear-localized protein 20 (.1) Potri.008G058700 [exp] 112 / 2e-29 AT3G55560 192 / 5e-59 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.010G200100 [exp] 111 / 4e-29 AT3G55560 209 / 2e-65 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.001G115200 [exp] 108 / 3e-28 AT4G22810 254 / 1e-83 Predicted AT-hook DNA-binding family protein (.1) Potri.003G116900 [exp] 108 / 3e-28 AT4G22810 258 / 5e-85 Predicted AT-hook DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10030966 pacid=23166822 polypeptide=Lus10030966 locus=Lus10030966.g ID=Lus10030966.BGIv1.0 annot-version=v1.0 ATGGCCGGCTTGGATCTTGGCACAACTTCTCGCTACAACATCCTCCACCACCACCACCACCAGCATCAACTCCACCACTTGCCCGACCTCCACCTCCACC AGAACCTCCTCCATCGCGATTTAAATCGGGGCGGAGCAGATGCTGAAGACGGCGTCGGAGACTATAACCACCATGGCGATGGTGGTTTGTTTTTCATGCC AGACCACCACCAAGAGGATAACGACCAGGAAGGTTCCGTGGTGGCCGCCAGGCGGCCGCGGGGGAGGCCGCCTGGTTCGAAGAACAAGCCGAAGCCGCCC GTGATAATCACGAGGGAGAGCGCCAACACGCTGCGAGCTCACATATTCGAGGTGGCCACGGGTTGCGATGTGTTTGAGTGCGTGTCCAACTACGCGCGGA GGAGGCAGCGCGGGATCTGCGTCATGAGCGGGGCAGGTATGGTGGTCAACGTCAGCATCCGCCAGCCTTCTACTGCTTCTTCCGCTGCTGGAGCAGGAGG AGGAGGAGCATCCGTCATCACGCTGCAGGGGAGATTCGAGATACTGTCGCTGTCTGGATCCTTCCTTCCGCCGCCGGCTCCTCCGGGAGCTACTAGCTTG ACGATCTTGCTTGCCGGAGGGCAAGGGCAGGTTGTTGGAGGGACCGTGGTAGGTGAGTTGACTGCGGCGGGGGTGGAGTGA
AA sequence Show only first row Show all	>Lus10030966 pacid=23166822 polypeptide=Lus10030966 locus=Lus10030966.g ID=Lus10030966.BGIv1.0 annot-version=v1.0 MAGLDLGTTSRYNILHHHHHQHQLHHLPDLHLHQNLLHRDLNRGGADAEDGVGDYNHHGDGGLFFMPDHHQEDNDQEGSVVAARRPRGRPPGSKNKPKPP VIITRESANTLRAHIFEVATGCDVFECVSNYARRRQRGICVMSGAGMVVNVSIRQPSTASSAAGAGGGGASVITLQGRFEILSLSGSFLPPPAPPGATSL TILLAGGQGQVVGGTVVGELTAAGVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	0	1
AT5G48630			Cyclin family protein (.1.2)		Lus10003151 [exp]	1.4	0.9592
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024362 [exp]	1.4	0.9611
AT3G15760			unknown protein		Lus10030098 [exp]	3.5	0.9533
AT5G41810			unknown protein		Lus10001907 [exp]	3.9	0.9558
AT1G71740			unknown protein		Lus10029742 [exp]	4.6	0.9532
AT3G06240			F-box family protein (.1)		Lus10014793 [exp]	4.7	0.9461
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10010871 [exp]	4.9	0.9552
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10007305 [exp]	5.0	0.9540
AT5G35370			S-locus lectin protein kinase ...		Lus10025618 [exp]	5.8	0.9428
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10017442 [exp]	6.9	0.9479

Compare expression of checked genes

Lus10030966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.