Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17810 81 / 1e-18 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G37740 82 / 2e-18 C2H2ZnF ATZFP10, ZFP10 zinc-finger protein 10 (.1) AT3G23130 77 / 7e-17 C2H2ZnF FLO10, FON1, SUP SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G42410 76 / 9e-17 C2H2ZnF ATZFP11, ZFP11 zinc finger protein 11 (.1) AT5G06070 74 / 1e-15 C2H2ZnF RAB, RBE RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G09290 60 / 4e-11 C2H2ZnF TAC1 telomerase activator1 (.1) AT5G43540 54 / 3e-09 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G53820 54 / 3e-09 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G24625 50 / 3e-07 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT1G80730 49 / 6e-07 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040083 [exp] 185 / 1e-58 AT4G17810 123 / 8e-35 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10004705 [exp] 80 / 5e-18 AT2G37740 100 / 1e-25 zinc-finger protein 10 (.1) Lus10021490 [exp] 81 / 1e-17 AT2G37740 103 / 1e-25 zinc-finger protein 10 (.1) Lus10010871 [exp] 80 / 2e-17 AT2G37740 103 / 9e-26 zinc-finger protein 10 (.1) Lus10022206 [exp] 79 / 2e-17 AT3G23130 100 / 1e-25 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10024362 [exp] 79 / 2e-17 AT2G37740 105 / 4e-27 zinc-finger protein 10 (.1) Lus10021215 [exp] 80 / 5e-17 AT3G23130 102 / 1e-25 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10000481 [exp] 74 / 1e-15 AT4G17810 100 / 8e-26 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10004578 [exp] 71 / 1e-14 AT4G17810 95 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G091200 [exp] 91 / 4e-22 AT4G17810 140 / 2e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G142900 [exp] 91 / 9e-22 AT4G17810 135 / 1e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G089600 [exp] 79 / 3e-17 AT2G37740 102 / 2e-25 zinc-finger protein 10 (.1) Potri.016G101400 [exp] 79 / 4e-17 AT2G37740 108 / 3e-27 zinc-finger protein 10 (.1) Potri.008G059000 [exp] 79 / 4e-17 AT5G06070 99 / 2e-24 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G163900 [exp] 76 / 1e-16 AT3G23130 119 / 1e-33 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G199800 [exp] 77 / 2e-16 AT5G06070 100 / 4e-25 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G041700 [exp] 71 / 1e-14 AT2G42410 105 / 3e-28 zinc finger protein 11 (.1) Potri.005G221400 [exp] 67 / 1e-13 AT2G42410 97 / 4e-25 zinc finger protein 11 (.1) Potri.010G074500 [exp] 66 / 7e-13 AT3G23130 73 / 7e-16 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030967 pacid=23166731 polypeptide=Lus10030967 locus=Lus10030967.g ID=Lus10030967.BGIv1.0 annot-version=v1.0 ATGGCTAGTGAGCTTGGCTTCCTTGCTCTCGCCCACCTCCAAAACGACAATGATCAAAACCAGAATCAGAATCACAACCAAAAACAGTTAGGCCGTCGTG GCCACCACCAAACTGCCCAGCCTCAGTTAGGCAACAACAGTGGGGCCGCGAGCACGTGGGTATGGAACCCTAAACGAACCGAGGAGGCCGAAGAAGAAGA GGAGGAAGAGTCGTGGGAAGTGAGGGCGTTTGAGGAAGATGCGGGGAACGTTTGGCCGCCACGGTCCTACACGTGCACCTTCTGCCGCCGCGAGTTCCGG TCGGCGCAAGCCCTAGGCGGCCATATGAACGTCCACCGCCGGGACCGTGCCAAGCTCCACCACCCACTGCCCTTACCTCGTCCCGGCGTACCACCATCCA CCGCGGTGGCGTCATCCTCCGCCTCCTCCTCGTCAACTTACGTCATCCCGACTCCCGAATACTCCTCCTCCACCGGGGGTTTGTGCTTGCTGTACCAATT CCCAAACCCTAATAATCACACTGTCGGAGGAGGAGGAGGAGGAGGGACGTTCAACCCGCCGCCGAATGTGAACAAGATTGCGTGGGGAGCGGCCACCGAG GGAGGGAATTCTCCGTCAACTGTCCTCTCCATGACACCGTCCACATCATCTTGTCCTCCTAATTCGCAGCCGTGTTATTCGGTAAGGGATGAAGAGGAGC TGGATTTAGAGCTAAGGCTATAG
AA sequence Show only first row Show all	>Lus10030967 pacid=23166731 polypeptide=Lus10030967 locus=Lus10030967.g ID=Lus10030967.BGIv1.0 annot-version=v1.0 MASELGFLALAHLQNDNDQNQNQNHNQKQLGRRGHHQTAQPQLGNNSGAASTWVWNPKRTEEAEEEEEEESWEVRAFEEDAGNVWPPRSYTCTFCRREFR SAQALGGHMNVHRRDRAKLHHPLPLPRPGVPPSTAVASSSASSSSTYVIPTPEYSSSTGGLCLLYQFPNPNNHTVGGGGGGGTFNPPPNVNKIAWGAATE GGNSPSTVLSMTPSTSSCPPNSQPCYSVRDEEELDLELRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10030967 [exp]	0	1
AT3G08770		LTP6	lipid transfer protein 6 (.1.2...		Lus10025230 [exp]	1.4	0.9264
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10042829 [exp]	1.7	0.9332
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10039094 [exp]	2.4	0.9249
					Lus10028110 [exp]	5.2	0.8980
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10038158 [exp]	6.9	0.8997
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10001355 [exp]	10.2	0.9071
AT2G27550		ATC	centroradialis (.1)		Lus10004886 [exp]	12.7	0.8809
AT3G51870			Mitochondrial substrate carrie...		Lus10027789 [exp]	15.5	0.9015
AT1G73190		ALPHA-TIP, TIP3...	ALPHA-TONOPLAST INTRINSIC PROT...		Lus10042375 [exp]	17.6	0.8351
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10001604 [exp]	17.7	0.8903

Compare expression of checked genes

Lus10030967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.