Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32700 276 / 2e-94 PLATZ transcription factor family protein (.1.2) AT4G17900 272 / 7e-93 PLATZ transcription factor family protein (.1.2) AT1G21000 215 / 4e-70 PLATZ transcription factor family protein (.1.2) AT1G76590 209 / 1e-67 PLATZ transcription factor family protein (.1) AT5G46710 196 / 5e-63 PLATZ transcription factor family protein (.1) AT1G43000 185 / 9e-59 PLATZ transcription factor family protein (.1) AT2G27930 160 / 3e-49 PLATZ transcription factor family protein (.1) AT2G12646 130 / 9e-37 PLATZ transcription factor family protein (.1) AT3G60670 127 / 6e-36 PLATZ transcription factor family protein (.1) AT1G31040 120 / 6e-33 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040082 [exp] 393 / 2e-140 AT4G17900 306 / 2e-106 PLATZ transcription factor family protein (.1.2) Lus10000482 [exp] 291 / 1e-99 AT4G17900 284 / 2e-97 PLATZ transcription factor family protein (.1.2) Lus10004577 [exp] 287 / 2e-98 AT4G17900 287 / 6e-99 PLATZ transcription factor family protein (.1.2) Lus10020337 [exp] 264 / 1e-88 AT4G17900 282 / 3e-96 PLATZ transcription factor family protein (.1.2) Lus10000952 [exp] 218 / 5e-71 AT1G21000 347 / 5e-122 PLATZ transcription factor family protein (.1.2) Lus10002700 [exp] 216 / 8e-70 AT1G21000 345 / 1e-120 PLATZ transcription factor family protein (.1.2) Lus10027735 [exp] 198 / 8e-64 AT1G21000 218 / 9e-72 PLATZ transcription factor family protein (.1.2) Lus10035554 [exp] 197 / 2e-63 AT1G21000 221 / 4e-73 PLATZ transcription factor family protein (.1.2) Lus10023411 [exp] 199 / 1e-62 AT1G21000 313 / 7e-107 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G092800 [exp] 321 / 5e-112 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.001G141500 [exp] 313 / 6e-109 AT4G17900 302 / 5e-105 PLATZ transcription factor family protein (.1.2) Potri.019G051200 [exp] 283 / 8e-97 AT4G17900 309 / 2e-107 PLATZ transcription factor family protein (.1.2) Potri.013G078500 [exp] 281 / 4e-96 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2) Potri.002G002200 [exp] 231 / 1e-76 AT1G21000 365 / 2e-129 PLATZ transcription factor family protein (.1.2) Potri.005G259000 [exp] 231 / 2e-76 AT1G21000 366 / 1e-129 PLATZ transcription factor family protein (.1.2) Potri.006G119400 [exp] 201 / 5e-65 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.016G097100 [exp] 199 / 3e-64 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2) Potri.009G003200 [exp] 187 / 1e-59 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1) Potri.001G212400 [exp] 184 / 1e-58 AT2G27930 224 / 6e-75 PLATZ transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10030968 pacid=23166756 polypeptide=Lus10030968 locus=Lus10030968.g ID=Lus10030968.BGIv1.0 annot-version=v1.0 ATGGGTGCTGGAGGTCCGAACGATGAAGAAAACCACGGCAGGTGGCCGCCATGGTTGAAGCCGCTTCTGAGGGAGAGGTTCTTCGTCCAATGCAAGATAC ACGCAGATTCACACAAGAGCGAATGCAACATGTACTGCTTGGATTGTATGAACGGCCCACTCTGCTCTCTCTGCCTCTCCTACCACAAGGATCACCGCGC TATTCAGATAAGGAGATCTTCGTACCACGACGTGATAAGGGTGAACGAGATACAGAAGGTACTGGACATCACTGGCGTCCAGACCTATGTGATTAACAGT GCTAGAGTTGTGTTCTTGAACGAAAGGCCACAGCCAAGGCCAGGGAAAGGTGTCACCAACACTTGCGAGGTCTGCGAACGAAGCCTGCTCGATTCGTTCC GATTCTGCTCCCTTGGTTGCAAGATTGCAGGGACATCAGGGAACGTCCAGAAGAGGAGGAAGCAGCAGCAAGTTAAAGATATGGATCATTCATTCTCTGA TGAATCATATAGCAGTACTACTACTACCCACAGCCATGGGGGACACAATGGACATTACAAGCGCAAGTTATACAACCAGCATCACCATGGAGGGTACATC AGCAGCAGCATTGATCACAAAATGGAGAGCTTCTCCCCTTCGACACCGCCTCCCACCTCCACGGGCTTCAGGACAGCCAAGAGGAGGAAGGGGATACCTC ACAGAGCCCCCATGGGAGGACTCATCATAGAATACTAA
AA sequence Show only first row Show all	>Lus10030968 pacid=23166756 polypeptide=Lus10030968 locus=Lus10030968.g ID=Lus10030968.BGIv1.0 annot-version=v1.0 MGAGGPNDEENHGRWPPWLKPLLRERFFVQCKIHADSHKSECNMYCLDCMNGPLCSLCLSYHKDHRAIQIRRSSYHDVIRVNEIQKVLDITGVQTYVINS ARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIAGTSGNVQKRRKQQQVKDMDHSFSDESYSSTTTTHSHGGHNGHYKRKLYNQHHHGGYI SSSIDHKMESFSPSTPPPTSTGFRTAKRRKGIPHRAPMGGLIIEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17900			PLATZ transcription factor fam...		Lus10030968 [exp]	0	1
AT1G68300			Adenine nucleotide alpha hydro...		Lus10041436 [exp]	2.0	0.9563
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Lus10012681 [exp]	2.0	0.9436
AT5G05140			Transcription elongation facto...		Lus10027295 [exp]	3.2	0.9380
AT1G48300			unknown protein		Lus10038034 [exp]	4.0	0.9495
AT1G68300			Adenine nucleotide alpha hydro...		Lus10034337 [exp]	4.0	0.9346
AT5G24890			unknown protein		Lus10009793 [exp]	7.1	0.9478
AT3G47800			Galactose mutarotase-like supe...		Lus10023611 [exp]	10.1	0.9348
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10020069 [exp]	13.0	0.9062
AT4G17900			PLATZ transcription factor fam...		Lus10040082 [exp]	15.4	0.9069
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10037156 [exp]	16.1	0.9299

Compare expression of checked genes

Lus10030968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.