Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32640 533 / 0 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G17880 514 / 1e-176 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 474 / 1e-160 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46830 179 / 3e-49 bHLH ATNIG1, bHLH028 NACL-inducible gene 1 (.1) AT1G01260 132 / 2e-32 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G00870 124 / 3e-30 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 123 / 2e-29 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G16430 117 / 1e-27 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09820 90 / 1e-18 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G63650 89 / 3e-18 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004574 [exp] 681 / 0 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10035366 [exp] 652 / 0 AT1G32640 376 / 9e-125 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 633 / 0 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004575 [exp] 535 / 0 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000037 [exp] 382 / 2e-130 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10035365 [exp] 171 / 6e-51 AT5G46760 129 / 7e-37 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005999 [exp] 157 / 2e-41 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030243 [exp] 132 / 3e-32 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10005966 [exp] 124 / 2e-29 AT1G01260 525 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G092200 [exp] 637 / 0 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.001G142200 [exp] 634 / 0 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.002G176900 [exp] 169 / 1e-45 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G103700 [exp] 162 / 2e-43 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G083500 [exp] 155 / 9e-41 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G147300 [exp] 146 / 1e-37 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G172101 [exp] 144 / 3e-36 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.014G099700 [exp] 139 / 1e-34 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G042000 [exp] 119 / 3e-28 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G221100 [exp] 118 / 4e-28 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030970 pacid=23166856 polypeptide=Lus10030970 locus=Lus10030970.g ID=Lus10030970.BGIv1.0 annot-version=v1.0 ATGACAGATTACCGCCTCCAATCGCCGGCCACCATGAACCTCTGGACTGATGACAACGCCTCCGTCATGGAAGCCTTCATGAATTCCGATCTCACCTCCC TCTGGCCCCCTCCTCCTCTCCCTCCTCCTCCTCCTCCTCCTCCACACTCCTCCGCCTCCACCTCCGCCGGCGGTGGTGGCGCCACCGTCAATCAAGACTC CCTCCAGCAGCGCCTCCAGGCCCTAATCGACGGCGCCAGAGAGAACTGGACCTACGCCATCTTCTGGCAGTCCTCGTACGATTTCTCCGGGGCCTCCTCC TCCTCCTCCTCCTCCACCGTCCTAGCTTGGGGCGACGGTTACTACAAGGGCGACGAACAAAAGGGAAACACCACGACGAAATCGAGCACTCGTAATTACA CCCCGGCAGAGCAGCAACACCGCAAGAAAGTCCTCCGCGAGCTCAATTCGCTGATCTCCGGTCCCAATTCGGCCTCGGACGACGCAGTCGACGAGGAGGT TACCGACACCGAGTGGTTCTTCCTCGTCTCCATGACCCAGTCGTTCGTGAACGGAGTCGGGTTGCCCGGACAGGCCTTCTTCAACGGGTTCCCCGCCTGG CTTGTCGGGTCGGATCGGATGGCTGCCGCGTCCTGCGAGCGGGCCAAGCAAGGCCAGGTTTTCGGTCTCCAGACAATGGTCTGCATCCCCTCGCAGAACG GCGTCGTCGAGCTCGGTTCCTCAGAGCTAATCCCACAGAGCTCCGATCTCATGAATAAGGTTAGGGTTCTCTTTAATTTCAGTACCGTCGATGTCTCCAC CGTTTGGCCGCAGTCGAATCCCGACCAGGGCGAAAACGACCCTTCCTCGCTCTGGATAGCCGACCCGACTCGCCTCGACCCACCTCAGAACGGAGCATCC TACCCGAGTTCAAGTAGCTTGACGGAGACCCCTGCCGGAATTCAGAACCAGACGCAGAGCTTTTTCACTCGTGAATTGAACTTCGGCAATGGATCATTTG GGGGGAATCAGCCAAAGCCGGAATCTGGTGAGATACTGAATTTTGGAGATAACAACAGCAAGAGGAGTTCCTCAAACCCTAATTTGAATCATCATAACCC TAACCCTCAATTAGAAGACAGTAACACGAACAAGAACAAGAAGAAGAAGCCATCTCCAACGTCAAGAGGTAGTAACAACGATGAAGGAATGCTTTCCTTC ACTTCAGGTGTTCTTCCTAGTTCAGGCAGTGTTAAGTCCAATGGAGGAGGAATGGTGGATTCAGACGTTGACCAATCTGATCTCGAACCTTCAGTGATTA AAGAAGTGGTGGTTGCAGAGCCGGAAAAGCGGCCGAGAAAGAGAGGGAGGAAGCCAGCTAACGGCAGAGAAGAGCCACTAAATCATGTGGAAGCAGAGAG GCAGAGGAGGGAGAAGCTGAACCAGAGATTCTACGCTTTAAGAGCAGTGGTCCCCAACGTGTCGAAGATGGACAAAGCATCCTTACTCGGGGATGCCATC TCCTACATCAAGGAGCTCCGATCGAAGCTCCAATCGACCGAGTCATCCAAGGAGGAGCTTGAGAGGCAAGTGGAGTCCATCAGGAAACAACAGCCTGAGC ATCAGGAATACAACAAGAAGGCGGGTAGCAACGAATTCGGAGGAGGACGAGGGGGTAAGACGAAAGCGATCGAGATGGATATAGACGTGAAGATAATCGG GTGGGATGCGATGATTAGAATACAATGCAGCAAGGAGAACCATCCGGCAGCTAGACTCATGGCAGGGTTGAAAGAGCTGGACTTGGATGTACACCATGCT AGTGTTTCAGTGGTGAATGATTTGATGATACAGCAAGCTACTGTAAAAATGGGTAGTCGATTCTACACACAGGAAGAGCTGAGGTTAGCATTGTCCAACA AAGTTGGTGGTGACACCAGATAG
AA sequence Show only first row Show all	>Lus10030970 pacid=23166856 polypeptide=Lus10030970 locus=Lus10030970.g ID=Lus10030970.BGIv1.0 annot-version=v1.0 MTDYRLQSPATMNLWTDDNASVMEAFMNSDLTSLWPPPPLPPPPPPPPHSSASTSAGGGGATVNQDSLQQRLQALIDGARENWTYAIFWQSSYDFSGASS SSSSSTVLAWGDGYYKGDEQKGNTTTKSSTRNYTPAEQQHRKKVLRELNSLISGPNSASDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPGQAFFNGFPAW LVGSDRMAAASCERAKQGQVFGLQTMVCIPSQNGVVELGSSELIPQSSDLMNKVRVLFNFSTVDVSTVWPQSNPDQGENDPSSLWIADPTRLDPPQNGAS YPSSSSLTETPAGIQNQTQSFFTRELNFGNGSFGGNQPKPESGEILNFGDNNSKRSSSNPNLNHHNPNPQLEDSNTNKNKKKKPSPTSRGSNNDEGMLSF TSGVLPSSGSVKSNGGGMVDSDVDQSDLEPSVIKEVVVAEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAI SYIKELRSKLQSTESSKEELERQVESIRKQQPEHQEYNKKAGSNEFGGGRGGKTKAIEMDIDVKIIGWDAMIRIQCSKENHPAARLMAGLKELDLDVHHA SVSVVNDLMIQQATVKMGSRFYTQEELRLALSNKVGGDTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10030970 [exp]	0	1
AT5G46760	bHLH	bHLH005, ATR2, ...	Basic helix-loop-helix (bHLH) ...		Lus10035365 [exp]	1.4	0.8948
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000037 [exp]	2.8	0.8826
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10009364 [exp]	6.3	0.8383
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10022497 [exp]	7.7	0.8571
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10035366 [exp]	8.3	0.8800
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10000583 [exp]	10.1	0.7179
AT3G22970			Protein of unknown function (D...		Lus10014718 [exp]	11.0	0.8207
AT3G50120			Plant protein of unknown funct...		Lus10019324 [exp]	11.5	0.8062
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006796 [exp]	14.1	0.7180
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10041591 [exp]	14.7	0.7982

Compare expression of checked genes

Lus10030970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.