Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15950 439 / 3e-155 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT1G80820 436 / 3e-154 CCR2, ATCCR2 cinnamoyl coa reductase (.1) AT5G19440 274 / 1e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 259 / 9e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 254 / 1e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G02400 240 / 1e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G33590 231 / 8e-74 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 226 / 9e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 220 / 2e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 218 / 4e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035369 [exp] 623 / 0 AT1G15950 456 / 6e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10041651 [exp] 491 / 1e-175 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10024068 [exp] 488 / 7e-172 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10009955 [exp] 268 / 5e-88 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026385 [exp] 261 / 1e-85 AT5G58490 533 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 246 / 1e-79 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012930 [exp] 228 / 4e-73 AT2G33590 360 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 222 / 4e-70 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024138 [exp] 219 / 4e-69 AT2G33590 420 / 2e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G181400 [exp] 483 / 8e-173 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045500 [exp] 480 / 1e-171 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 478 / 1e-170 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 478 / 1e-170 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045000 [exp] 465 / 1e-165 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045100 [exp] 461 / 4e-164 AT1G15950 483 / 9e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045800 [exp] 322 / 4e-110 AT1G15950 350 / 1e-121 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G256400 [exp] 267 / 8e-88 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 265 / 7e-87 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G076300 [exp] 257 / 5e-84 AT5G58490 511 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10030973 pacid=23166842 polypeptide=Lus10030973 locus=Lus10030973.g ID=Lus10030973.BGIv1.0 annot-version=v1.0 ATGCCAGCAGTACCTGACACCACATCCCTCATCGTCGGCCATGGCCAGACCGTCTGCGTCACCGGCGCCGGCGGCTTCATTGGCTCATGGATCGTTAAAC TTCTCCTCCACAGAGGCTACTCCGTCAGAGGAACCGTCAGGAATCCAGAGGATCCGAAGAATGGACACCTGAAAGAGCTACAAGGAGCCAATGAGCGGCT GACCCTGTGGGAAGCCGACCTACTGGATTACGACAGTCTCCGACGAGCCATTGATGGATGTCATGGCGTTTTCCACACCGCTTCCCCTATCTCCAATGAT CCTGACGAAATGCTAGAGCCGGCGGTGGACGGGACTAAAAATGTAATAATAGCGGCATCGGAAGCAAGAGTCCGGCGTGTTGTGTTCACGTCGTCCATCG GCGCCGTCTACATGGATCCCAACCGAAACCATGACGTGGAGATGGATGAGTCCTTTTGGAGCGATCTCGACTATTGCAAGAACACCAAGAACTGGTACTG CTACGGCAAAACGGCAGCGGAGCTGAGAGCATGGAAATTGGCGAAAGAGAAGGGTGTGGATTTGGTTGTGGTCAACCCTGTGGTTGTGGTCGGACCATTG CTCCAACCAACTGTCAACGCTAGCAGCGTGCACATACTCAAGTACCTAGCCGGTTGGGTAAAAACCTACGCCAATGCAGTTCAAGGGTACGTTCACGTTA GAGACGTGGCACTAGCCCACATCCTCGTATTCGAGAACATGTATGCATCTGGTCGCTACCTTTGCGTCGAAAGTGTCCTCCACCGCGGTGAGGTGGTTGA GATTCTCGACGAGTTGTTCCCCGGTTATCCCCTCCCAACCAAGTGCAAGGACGAGAAGAGCCCTAGAGCCAAACCTCACAAGTTTTCGTGCCAAAAGTTG AAGGACATTGGTTTGGAGTTCACTCCGGTGAGACAGTGTTTGTACGAAACGGTGAAGTCCCTGCAGGAACATGGCCATCTCGTTGCTCTTCCAAAACAAA ATTTCGAAAAGTTGAGTTTTGAACCATGA
AA sequence Show only first row Show all	>Lus10030973 pacid=23166842 polypeptide=Lus10030973 locus=Lus10030973.g ID=Lus10030973.BGIv1.0 annot-version=v1.0 MPAVPDTTSLIVGHGQTVCVTGAGGFIGSWIVKLLLHRGYSVRGTVRNPEDPKNGHLKELQGANERLTLWEADLLDYDSLRRAIDGCHGVFHTASPISND PDEMLEPAVDGTKNVIIAASEARVRRVVFTSSIGAVYMDPNRNHDVEMDESFWSDLDYCKNTKNWYCYGKTAAELRAWKLAKEKGVDLVVVNPVVVVGPL LQPTVNASSVHILKYLAGWVKTYANAVQGYVHVRDVALAHILVFENMYASGRYLCVESVLHRGEVVEILDELFPGYPLPTKCKDEKSPRAKPHKFSCQKL KDIGLEFTPVRQCLYETVKSLQEHGHLVALPKQNFEKLSFEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10030973 [exp]	0	1
					Lus10028146 [exp]	2.0	0.7956
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10035369 [exp]	3.7	0.7495
AT5G24130			unknown protein		Lus10039333 [exp]	6.0	0.7672
AT2G34930			disease resistance family prot...		Lus10016325 [exp]	9.5	0.7950
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10016323 [exp]	13.6	0.7522
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10017693 [exp]	19.4	0.7391
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10003940 [exp]	36.9	0.7210
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10022036 [exp]	45.7	0.7325
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Lus10025116 [exp]	48.5	0.7391
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10016324 [exp]	51.4	0.7315

Compare expression of checked genes

Lus10030973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.