Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17970 598 / 0 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46610 568 / 0 Aluminium activated malate transporter family protein (.1.2.3) AT5G46600 547 / 0 Aluminium activated malate transporter family protein (.1) AT3G18440 266 / 7e-82 ATALMT9 aluminum-activated malate transporter 9 (.1) AT4G00910 255 / 2e-78 Aluminium activated malate transporter family protein (.1) AT1G08440 248 / 6e-76 Aluminium activated malate transporter family protein (.1) AT1G08430 237 / 1e-71 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT1G18420 237 / 9e-71 Aluminium activated malate transporter family protein (.1) AT1G25480 233 / 9e-70 Aluminium activated malate transporter family protein (.1) AT1G68600 233 / 2e-69 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000898 [exp] 749 / 0 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10004556 [exp] 727 / 0 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10013577 [exp] 264 / 5e-82 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10021272 [exp] 259 / 5e-80 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10027657 [exp] 237 / 1e-70 AT3G18440 711 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10033223 [exp] 228 / 1e-68 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10001528 [exp] 228 / 3e-68 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1) Lus10034301 [exp] 224 / 3e-66 AT3G18440 555 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10001849 [exp] 213 / 3e-63 AT1G08440 389 / 1e-131 Aluminium activated malate transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G144300 [exp] 678 / 0 AT4G17970 634 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.001G085900 [exp] 278 / 1e-87 AT4G00910 508 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 275 / 4e-86 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.003G145000 [exp] 274 / 7e-86 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1) Potri.005G208500 [exp] 269 / 9e-85 AT4G17970 228 / 4e-69 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.009G017800 [exp] 270 / 2e-84 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 265 / 2e-82 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 265 / 2e-82 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.002G054300 [exp] 255 / 2e-79 AT5G46600 252 / 3e-78 Aluminium activated malate transporter family protein (.1) Potri.001G217050 [exp] 254 / 3e-78 AT2G27240 457 / 9e-158 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10030975 pacid=23166730 polypeptide=Lus10030975 locus=Lus10030975.g ID=Lus10030975.BGIv1.0 annot-version=v1.0 ATGGAGGAATGGAAGAGGCAAGGGTGGACAGCATGGCGAAAGACCAAGAGAGCTCCGGCTTGCGTCGGCCGGAAGCTCATTAAAATCGGGAGAGACGACC CACGACGAGCCATCCACGCCGTGAAAGTGGGCCTAGCACTCACTCTGGTTTCGCTCCTCTACTTACTGGAGCCGCTCTTCCAGAACGTGGGCCAGAACGC CATCTGGGCCGTCATGACCGTCGTCGTTGTTCTCGAGTTCACCGCTGGAGCAACTCTCTGTAAAGGGTTGAACAGAGGATTAGGAACTATCTTGGCTGGC TCCTTGGCCTTCTTTATCGAGTACATTGCGGAGGAAACGGGCCACGTCTTCCGAGCCATCTTCATCGGCTCTGCTGTCTTCACCATTGGGGCAGCGGCAA CATACATAAGGTTCTTACCGTACGTGAAGAAGAACTACGACTATGGAGTTCTAATCTTCCTCCTCACTTTCAACCTCATCACCGTCTCCAGCTTCCGCGT CATCAATGTCTTGAAGATTGCGCAGGAGAGGTTCGTCACCATCGCCATCGGCTGTGGAATCTGTCTCTTCATGAGTCTGCTCATCTTCCCGATTTGGTCT GGGCAAGACCTGCACAATTCCACGGTTAACAAGCTTCAAGGGCTGGCTACTTCGATTGAAGCCTGTGTGAATGAGTACTTTAGGGAAGATTGTGGCAAAG AGGAGGATAAACTAGCGGAAGACGACGACGAAAACGACAAGTCGTGTGATGATGAGGATCCCATTTACAAAGGGTACAAGGCCGTTCTGGACTCCAAATC GATTGACGAAGCTCTGGCGTTATACGCGAGCTGGGAACCGAGGCATTCGAGGCACTGCAAGTATCCATGGCAGCAGTATGTCAAAGTTGGAGCTGCTCTT CGCCGTTTCAGCTACACTGTTGTAGCTCTCCATGGATGTTTACAGACTGAAATTCAGACTACAAAATCATGCAGAGCTTTGTTCAAAGATCCATGCACCA GAGTAGCAAGTGAAGTGTCCAAGGTACTACTGGAGCTAGCAATCAGCATCCAGAACAGGCGACATTGCTCACCAGAGATACTCACAGACAATCTCCAGAA AGCTCTACTGGACTTAAACAACGCCATAAAGTCCCAACCGAGGCTCTTCCTCGGCTCCAACACCAACCAAGCCACCAACATGCTGGCCATGGCTGCTGCA CAAGCTCGACAGGAGAGTAGGGAAGGAGGAGTTTCGCTATCGACTGTCAAAACCGACTCATCAGCACTTACGGAGTGGAAGACAAGGCATCAACATCTTC ATCATCATCAGTCCAAGGAGTTGGCAGCAGAGAGGAAGGTGTTGAGGCCACAACTGAGCAAGATTGCGATGATGACATGCAGCCTCGAGTTCTGCGAGGC ACTTCCTTTTGCAGCGTTTGCTTCGCTACTGGTGGAGATTGTAGCGAGGCTGGACAGTGTGATGGAGGAGATTGAGGAGCTTGCAAGGGTGGCTTGCTTC AAGGAGTTTAAGCTGCAGGATGGTGATGATGTGGTGGTGACTGTTGAAACTCCTAAAGTGAATGCTGCTGACCATAACTTGCCTTCTCATTTTGTGGACT GA
AA sequence Show only first row Show all	>Lus10030975 pacid=23166730 polypeptide=Lus10030975 locus=Lus10030975.g ID=Lus10030975.BGIv1.0 annot-version=v1.0 MEEWKRQGWTAWRKTKRAPACVGRKLIKIGRDDPRRAIHAVKVGLALTLVSLLYLLEPLFQNVGQNAIWAVMTVVVVLEFTAGATLCKGLNRGLGTILAG SLAFFIEYIAEETGHVFRAIFIGSAVFTIGAAATYIRFLPYVKKNYDYGVLIFLLTFNLITVSSFRVINVLKIAQERFVTIAIGCGICLFMSLLIFPIWS GQDLHNSTVNKLQGLATSIEACVNEYFREDCGKEEDKLAEDDDENDKSCDDEDPIYKGYKAVLDSKSIDEALALYASWEPRHSRHCKYPWQQYVKVGAAL RRFSYTVVALHGCLQTEIQTTKSCRALFKDPCTRVASEVSKVLLELAISIQNRRHCSPEILTDNLQKALLDLNNAIKSQPRLFLGSNTNQATNMLAMAAA QARQESREGGVSLSTVKTDSSALTEWKTRHQHLHHHQSKELAAERKVLRPQLSKIAMMTCSLEFCEALPFAAFASLLVEIVARLDSVMEEIEELARVACF KEFKLQDGDDVVVTVETPKVNAADHNLPSHFVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	0	1
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032074 [exp]	1.4	0.9580
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10024328 [exp]	4.0	0.8808
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014606 [exp]	4.5	0.9332
AT1G13680			PLC-like phosphodiesterases su...		Lus10031973 [exp]	4.9	0.9103
AT2G24400			SAUR-like auxin-responsive pro...		Lus10033348 [exp]	5.3	0.9272
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017765 [exp]	5.7	0.9042
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	5.7	0.9289
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10031972 [exp]	5.9	0.9172
AT5G25840			Protein of unknown function (D...		Lus10006044 [exp]	7.0	0.9051
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10018230 [exp]	7.4	0.8912

Compare expression of checked genes

Lus10030975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.