Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67170 246 / 4e-78 unknown protein AT3G14750 151 / 3e-42 unknown protein AT1G55170 120 / 6e-31 unknown protein AT5G61920 108 / 5e-27 unknown protein AT2G30120 87 / 6e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035371 [exp] 412 / 2e-144 AT1G67170 284 / 2e-95 unknown protein Lus10038143 [exp] 144 / 1e-39 AT3G14750 275 / 1e-91 unknown protein Lus10013698 [exp] 136 / 1e-36 AT3G14750 298 / 3e-100 unknown protein Lus10019966 [exp] 133 / 1e-35 AT1G67170 137 / 3e-38 unknown protein Lus10005563 [exp] 133 / 2e-35 AT3G14750 288 / 2e-96 unknown protein Lus10015629 [exp] 132 / 3e-35 AT1G55170 236 / 2e-77 unknown protein Lus10037647 [exp] 131 / 4e-35 AT1G55170 233 / 6e-76 unknown protein Lus10015495 [exp] 130 / 2e-34 AT1G67170 139 / 1e-38 unknown protein Lus10015628 [exp] 127 / 5e-34 AT1G55170 211 / 3e-68 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G109700 [exp] 346 / 2e-115 AT1G67170 282 / 3e-91 unknown protein Potri.006G178100 [exp] 154 / 2e-43 AT5G61920 155 / 3e-46 unknown protein Potri.001G382700 [exp] 138 / 2e-37 AT3G14750 297 / 6e-100 unknown protein Potri.009G076700 [exp] 127 / 3e-33 AT3G14750 173 / 8e-52 unknown protein Potri.003G037900 [exp] 125 / 4e-33 AT1G55170 259 / 2e-86 unknown protein Potri.001G281400 [exp] 119 / 1e-30 AT2G30120 161 / 4e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030976 pacid=23166863 polypeptide=Lus10030976 locus=Lus10030976.g ID=Lus10030976.BGIv1.0 annot-version=v1.0 ATGGCAAGTAAAGGTCGGATTCCACCTCCTCATATGCGGCGCCCTCTTCCGGGGCCTGAACCTATGCATCCTGCTGACCAGTTTGGTCTTGGAATGAGAC CTCCACCTGGTCCTTTTCCTCCATTTGACATGTTACCTCCACGGGAGGTCTTGGAGCAGAAGCTTTCTGCACAGGAGATGGAGATGCAGAGACTTGCCAC AGAGAACCAAAGGCTTGCTGCTTCTCATGGGAGCTTAAGACACGAACTTGTTGCTGCTCAGCATGAGCTCCAGAGGCTGCATGCTCATGTACAAGCGATC AGGGCAGAAAGAGAGCAACAGATGAAGGGTCTCTCCGATAAGACGTCAAAGATGGAAAACGATTTGAAAGGTGCCGAGCCTATGAAGAAGGAGTTGCAGC AGGCACGGACAGAAGCTGAGAAGTTGGTTTCAGCTAGGCAGGAGCTTATGTCTAAAGTGCATCAGTTAAATCAAGAAATTCACAAAGCTCACGTGGAGGC ACAGCAAATACCTGCTTTAATGTCGGAACTAGAGGGTCTCAGACAAGAACAACAGCGATGCAGGCTTTCATATGACTATGAGAAGAAACTATTTCACGAT CATCTCGAATCTCTTCAAGGAATGGAAAAGAACTATATGACAATGGCCAGAGAAGTGGAAAAACTTCGTTCTCAATTGGCTAATATAGCTGGGAACAGCG AGATTGAGGCTCCTGGTCCATGGCGTACTGGAGGACAAAGTATGTATGAAGATGGCTACGGTGTTCATCAAGGCCAGGGATATGGAGCAGGTGCAGGCAA CTCGGGGCCCACCGCTGCTGCCTCTAATGTCGCTAATGCGGGTGCTCAATCTGGGTCTGGAGTTGCAAAGCCTGGTAATGAGGCATTAAAAGTTCCAGGT TATGATCCCTCCAAGGGGGGCGGCTTTGATCCATCAAGAGGCCCTGGTTACGACATGCAACAAAGAATGCATGGTTACGATGGTCAGAGAGGCCCCGCCT ACGAAATGCAACAGAGAGCAGCAGCTGCAGCTGGCTATGATCCAGCACATAGACACCACGGATATAGTGATATGCAATGGGGAGCAAACTATGACGCAGC GAGGAGCGCTGCCTATGATGCACTTTCAAGAGGGCAGGTTGCGCAACAAGGGCTAATGGCACCGGCAGCTGCCGTTCCAAACAATGCGACTTATGGGTCT GCAATGCCGCCAGCAGGACGTGCGGGAGGTGGATATGATGCAGCTGCAGCAGCTTCTCGATCTGGAAATCCGGCCAAGAGATGA
AA sequence Show only first row Show all	>Lus10030976 pacid=23166863 polypeptide=Lus10030976 locus=Lus10030976.g ID=Lus10030976.BGIv1.0 annot-version=v1.0 MASKGRIPPPHMRRPLPGPEPMHPADQFGLGMRPPPGPFPPFDMLPPREVLEQKLSAQEMEMQRLATENQRLAASHGSLRHELVAAQHELQRLHAHVQAI RAEREQQMKGLSDKTSKMENDLKGAEPMKKELQQARTEAEKLVSARQELMSKVHQLNQEIHKAHVEAQQIPALMSELEGLRQEQQRCRLSYDYEKKLFHD HLESLQGMEKNYMTMAREVEKLRSQLANIAGNSEIEAPGPWRTGGQSMYEDGYGVHQGQGYGAGAGNSGPTAAASNVANAGAQSGSGVAKPGNEALKVPG YDPSKGGGFDPSRGPGYDMQQRMHGYDGQRGPAYEMQQRAAAAAGYDPAHRHHGYSDMQWGANYDAARSAAYDALSRGQVAQQGLMAPAAAVPNNATYGS AMPPAGRAGGGYDAAAAASRSGNPAKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67170			unknown protein		Lus10030976 [exp]	0	1
AT4G24200			Transcription elongation facto...		Lus10028515 [exp]	1.7	0.8828
AT2G47970			Nuclear pore localisation prot...		Lus10027618 [exp]	1.7	0.8317
AT2G39100			RING/U-box superfamily protein...		Lus10034165 [exp]	3.7	0.7857
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10019164 [exp]	5.3	0.8304
AT1G06510			unknown protein		Lus10001505 [exp]	5.7	0.8400
AT4G39100		SHL1	short life, PHD finger family ...		Lus10028801 [exp]	5.7	0.8001
AT3G13670			Protein kinase family protein ...		Lus10039203 [exp]	6.5	0.8142
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	8.7	0.8156
AT2G30120			unknown protein		Lus10026389 [exp]	12.4	0.8115
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10004167 [exp]	18.0	0.7922

Compare expression of checked genes

Lus10030976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.