Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61600 315 / 2e-104 Protein of unknown function (DUF1262) (.1) AT1G13540 211 / 1e-64 Protein of unknown function (DUF1262) (.1) AT1G13480 209 / 1e-63 Protein of unknown function (DUF1262) (.1) AT1G13520 205 / 5e-62 Protein of unknown function (DUF1262) (.1) AT1G13500 201 / 1e-60 Protein of unknown function (DUF1262) (.1) AT1G13530 197 / 6e-59 Protein of unknown function (DUF1262) (.1) AT1G13490 189 / 2e-56 Protein of unknown function (DUF1262) (.1) AT1G13470 185 / 1e-54 Protein of unknown function (DUF1262) (.1) AT1G13510 183 / 7e-54 Protein of unknown function (DUF1262) (.1) AT1G13550 178 / 7e-52 Protein of unknown function (DUF1262) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031913 [exp] 261 / 2e-83 AT1G13480 305 / 8e-101 Protein of unknown function (DUF1262) (.1) Lus10035080 [exp] 259 / 1e-82 AT1G13520 313 / 6e-104 Protein of unknown function (DUF1262) (.1) Lus10035372 [exp] 186 / 6e-58 AT1G61600 84 / 2e-19 Protein of unknown function (DUF1262) (.1) Lus10035379 [exp] 165 / 1e-49 AT1G61600 83 / 3e-19 Protein of unknown function (DUF1262) (.1) Lus10031916 [exp] 166 / 4e-49 AT1G61600 178 / 9e-54 Protein of unknown function (DUF1262) (.1) Lus10031914 [exp] 98 / 5e-24 AT1G13550 114 / 2e-30 Protein of unknown function (DUF1262) (.1) Lus10031915 [exp] 53 / 3e-08 AT1G13510 108 / 8e-29 Protein of unknown function (DUF1262) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G106100 [exp] 414 / 2e-143 AT1G61600 398 / 5e-137 Protein of unknown function (DUF1262) (.1) Potri.T093108 [exp] 291 / 2e-95 AT1G13480 323 / 3e-108 Protein of unknown function (DUF1262) (.1) Potri.008G109400 [exp] 290 / 5e-95 AT1G13480 321 / 2e-107 Protein of unknown function (DUF1262) (.1) Potri.008G109500 [exp] 280 / 5e-91 AT1G13480 339 / 3e-114 Protein of unknown function (DUF1262) (.1) Potri.T077590 [exp] 277 / 4e-90 AT1G13480 334 / 1e-112 Protein of unknown function (DUF1262) (.1) Potri.018G008300 [exp] 276 / 2e-89 AT1G13480 330 / 1e-110 Protein of unknown function (DUF1262) (.1) Potri.010G133500 [exp] 254 / 6e-81 AT1G13480 310 / 3e-103 Protein of unknown function (DUF1262) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06880 [flax] [poplar] DUF1262 Protein of unknown function (DUF1262)
Representative CDS sequence Show only first row Show all	>Lus10030977 pacid=23166747 polypeptide=Lus10030977 locus=Lus10030977.g ID=Lus10030977.BGIv1.0 annot-version=v1.0 ATGTACGTGACGAGGCCACTTTCGTTGTTGAGGAAGCACCCTCACAGTCTGTCAATGGATCCTCCAGAGGGACCCTACACAGGGTATCTGGTGATAACAG ACGAAGAAGCAGAGTCCCAAGACAGTTGGTGCTGCGGGATTCGCAAGGACAGAAAGGTCAAGAAGCTACCTTTCCCTCAGGACAAGATCCTCAGCGTGTT CCACGATATGTCCGATTACGGCAGAGACCATGAGTTGACCATGAAGGTTAGAAAAGTATGGTTCGTCCCCGTTCTCGATCGCCCGCTCTCTTCCAACTGC TACTACGTCATCAAATCCCACGGCCGCTCCCGCAAAGGCCAAGCCTACAGAAGCTCCAGGGAAAGTGATATGGGTTTATGCTGCTTTGAAGGAGTAATCA AGGACAAGAAGCCAAAGCCATTTGACTACACGAACGTATACCACCAGTTCAAGGTTCACAGGCACCACCAGAATAGCTTCTTCGCCAAGTCACTAGCCTT AGACGGTCTCCCTCCACGGTTCCTCATGAGAAGAGGATGGAAGCTGAGATCGTCGAGATCGAAGAAACGGCTTCACCTGACTGAAGCATTGGGACTTGAT GCACAGTTTAGATCGCATGTTCCGAGGGTAGACAACTTCCCGATCTACAGCAGGACTTCTCCTCCCGAGGTGGTGGGGAAATGGTACTGTCCGTTTATGT TCATAAAGGAGGGAGCTTTATCAGTGAAGGAGCAGATGCGGTTTTCGAGGGTTTATAGAGTGAGCCTTGAGAAGTACTGGCAGGAGATATATTCGTGTTC GAACACTGCATTTGGTAATGATGATGATGATACTAGTACGGAGGTGGTGGGAGCGGTGGTGAGCTTCAGGGTGGCGGTGGGGAGGAGAGCCGATGTGGTG TTTGGCAGAGAGGCAGCTATGGTGGTGAGGCATGGCGATGGTCATCACGGTATGGTGTTGTTTAGGAGTAAGATGGATAAGAGGGTTGTGGTTGGGTTGA GTGTTGCAGTTGTGAAGAAGATGGAATGGGTGATGGAGGAAGGAGGGTGGCTTCATGATGATCAAAGGGTGGTTAGAGTTGAGGAGGAAGTTGAGATTGG GAACAATGGTTGGAGGAGATTCAGTTGCTATGTACTTGTTGAGAGCTTTGTTTTCAGGAGGATGGATGGGACTGTGGTTCTCAAGTCTGATTTCAGGCAT ACCAATAACATCAAATGGAGATGGGATTAA
AA sequence Show only first row Show all	>Lus10030977 pacid=23166747 polypeptide=Lus10030977 locus=Lus10030977.g ID=Lus10030977.BGIv1.0 annot-version=v1.0 MYVTRPLSLLRKHPHSLSMDPPEGPYTGYLVITDEEAESQDSWCCGIRKDRKVKKLPFPQDKILSVFHDMSDYGRDHELTMKVRKVWFVPVLDRPLSSNC YYVIKSHGRSRKGQAYRSSRESDMGLCCFEGVIKDKKPKPFDYTNVYHQFKVHRHHQNSFFAKSLALDGLPPRFLMRRGWKLRSSRSKKRLHLTEALGLD AQFRSHVPRVDNFPIYSRTSPPEVVGKWYCPFMFIKEGALSVKEQMRFSRVYRVSLEKYWQEIYSCSNTAFGNDDDDTSTEVVGAVVSFRVAVGRRADVV FGREAAMVVRHGDGHHGMVLFRSKMDKRVVVGLSVAVVKKMEWVMEEGGWLHDDQRVVRVEEEVEIGNNGWRRFSCYVLVESFVFRRMDGTVVLKSDFRH TNNIKWRWD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61600			Protein of unknown function (D...		Lus10030977 [exp]	0	1
AT4G14740			Plant protein of unknown funct...		Lus10039370 [exp]	1.0	0.9258
					Lus10040811 [exp]	3.7	0.9235
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10029787 [exp]	3.9	0.9153
AT2G36330			Uncharacterised protein family...		Lus10002372 [exp]	4.2	0.8919
AT5G48060			C2 calcium/lipid-binding plant...		Lus10037479 [exp]	6.0	0.9140
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10004289 [exp]	8.1	0.9019
AT4G14740			Plant protein of unknown funct...		Lus10006614 [exp]	9.0	0.8755
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10018337 [exp]	11.5	0.9010
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10024029 [exp]	12.2	0.8764
AT1G52140			unknown protein		Lus10025828 [exp]	13.9	0.8859

Compare expression of checked genes

Lus10030977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.