Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17980 273 / 6e-91 NAC ANAC071 NAC domain containing protein 71 (.1) AT5G46590 268 / 9e-89 NAC ANAC096 NAC domain containing protein 96 (.1) AT1G32510 253 / 7e-83 NAC ANAC011 NAC domain containing protein 11 (.1) AT1G65910 236 / 3e-72 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G17730 224 / 7e-72 NAC ANAC057 NAC domain containing protein 57 (.1) AT1G54330 221 / 4e-70 NAC ANAC020 NAC domain containing protein 20 (.1) AT5G17260 224 / 5e-69 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G03200 223 / 9e-69 NAC ANAC045 NAC domain containing protein 45 (.1) AT1G12260 186 / 1e-55 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT4G35580 188 / 3e-55 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035373 [exp] 665 / 0 AT4G17980 280 / 2e-93 NAC domain containing protein 71 (.1) Lus10026373 [exp] 233 / 1e-74 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10042284 [exp] 232 / 2e-74 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 231 / 6e-70 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10010959 [exp] 227 / 5e-69 AT1G65910 389 / 9e-128 NAC domain containing protein 28 (.1) Lus10020794 [exp] 229 / 1e-67 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10033251 [exp] 193 / 2e-56 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10008285 [exp] 192 / 2e-56 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10017915 [exp] 184 / 2e-55 AT1G71930 314 / 4e-107 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G089800 [exp] 342 / 3e-116 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.001G144400 [exp] 324 / 3e-109 AT4G17980 318 / 2e-108 NAC domain containing protein 71 (.1) Potri.015G030200 [exp] 226 / 5e-73 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.008G081500 [exp] 229 / 1e-72 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.010G174600 [exp] 223 / 3e-70 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.012G038100 [exp] 217 / 2e-68 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1) Potri.004G081000 [exp] 226 / 6e-68 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.017G139500 [exp] 223 / 7e-67 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.002G061300 [exp] 202 / 2e-59 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1) Potri.011G149300 [exp] 194 / 6e-56 AT1G33060 387 / 2e-125 NAC 014 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10030978 pacid=23166844 polypeptide=Lus10030978 locus=Lus10030978.g ID=Lus10030978.BGIv1.0 annot-version=v1.0 ATGGGTGGAGCTTCGTTGCCGCCAGGGTTCCGATTCCATCCTACGGATGAAGAACTGGTCGGATACTACCTGCACAGGAAAGTTCACGGACTCGAAATCG AGCTCGAAGTTGTCCCTGTTGTCGACTTGTACAAATTCGATCCTTGGGAGCTACCAGAGAAATCGTTCCTTCCGAGACGAGACATGGAATGGTTCTTCTT CTGTCCCAGGGACCGAAAGTACCCGAATGGGTCAAGAACGAACAGAGCAACACGAGCTGGATACTGGAAAGCAACAGGTAAAGACAGGAAGATCGTATGC AGATCTCCAGGAGGGTTGACCGGATACCGAAAGACACTAGTTTTCTACCGTGGAAGGGCTCCTCTAGGCGACCGGATGGATTGGGTCATGCACGAATATC GTTTCGAAGACGATCCCTACTCGTCAAGCACACAGGGAGCCTATGCATTGTGTCGGATTGTGAAGAGGAATGAACAAGCTAGCAAGACTGGTTCGAGGGA TGCCTCTCCTTCTTCTTCATTGATGATAACCGGAGATGCGACTGCAAGATCGAGAAGGGGTTCGAGAAAGAATGGGGAATTGGTTGCATCAACTTCAGTA ATTTTCAGTGAAGGATTGAACCTTTCGGATAGCTTGCAGTCCACTCCAATGAGTTCTCCTCCTCGTCAAGTAACAACGGAGTCTGAGCAGCTGATTTCAG TGGATACCAACGACCCATCTAACCCATGGCTTCTTTCACCTGATTTAATCCTCGACACGTCTAAGGAGTATTCACGAGACCAAGGAAGCGGATTCTTCTC ACATTACAAAAGCACGACGACAATGATGATACAACCATGGCATCAACATTGCGATAATAACGAACCTTTCTCAACGAGTAGCGCTTCGTATTCAAATTTC GTGATGGCAGATAATGTTGAACATTCTTCGGATCATGATCTTAGTCACATTGGATCGTGGAATATGTCGCCGTACATGGACTTGTGGGGGAACGATGAGC AGCCTGATATGACGTCATTCTATAATGATTATGACCACATGAACAACACCAATCATTGA
AA sequence Show only first row Show all	>Lus10030978 pacid=23166844 polypeptide=Lus10030978 locus=Lus10030978.g ID=Lus10030978.BGIv1.0 annot-version=v1.0 MGGASLPPGFRFHPTDEELVGYYLHRKVHGLEIELEVVPVVDLYKFDPWELPEKSFLPRRDMEWFFFCPRDRKYPNGSRTNRATRAGYWKATGKDRKIVC RSPGGLTGYRKTLVFYRGRAPLGDRMDWVMHEYRFEDDPYSSSTQGAYALCRIVKRNEQASKTGSRDASPSSSLMITGDATARSRRGSRKNGELVASTSV IFSEGLNLSDSLQSTPMSSPPRQVTTESEQLISVDTNDPSNPWLLSPDLILDTSKEYSRDQGSGFFSHYKSTTTMMIQPWHQHCDNNEPFSTSSASYSNF VMADNVEHSSDHDLSHIGSWNMSPYMDLWGNDEQPDMTSFYNDYDHMNNTNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Lus10030978 [exp]	0	1
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10024085 [exp]	2.6	0.8900
AT5G18980			ARM repeat superfamily protein...		Lus10001111 [exp]	4.5	0.8691
AT4G27270			Quinone reductase family prote...		Lus10020076 [exp]	8.2	0.8300
AT1G20180			Protein of unknown function (D...		Lus10017286 [exp]	10.8	0.8131
AT3G24460			Serinc-domain containing serin...		Lus10033091 [exp]	13.6	0.8248
AT5G18980			ARM repeat superfamily protein...		Lus10034018 [exp]	16.2	0.8133
AT2G16980			Major facilitator superfamily ...		Lus10004157 [exp]	18.4	0.7997
AT2G14095			unknown protein		Lus10010746 [exp]	19.8	0.8339
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10025002 [exp]	20.3	0.8190
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010436 [exp]	20.5	0.8002

Compare expression of checked genes

Lus10030978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.