Plant FIBer expression Database

Lus10030980 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35470 47 / 6e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035375
[exp]
206 / 4e-69 AT2G35470 89 / 8e-23 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G095500
[exp]
73 / 7e-17 AT2G35470 87 / 5e-22 unknown protein
Potri.001G138300
[exp]
57 / 6e-11 AT2G35470 79 / 4e-19 unknown protein
PFAM info
Representative CDS sequence
>Lus10030980 pacid=23166795 polypeptide=Lus10030980 locus=Lus10030980.g ID=Lus10030980.BGIv1.0 annot-version=v1.0
ATGCAGAGGCAGTCGCTAGGATCTCCAGTCTCCAAGCTCCATTTCCATGGCGGATCGCTCCCCAAACACGACGCCGGCATCCCTACTGACGATGACAGCT
GCAAAGCCTCCTCCCTATCTCCTTATGAAGACCTCAAAACCGCCAAGCCTAGTTCTCGTCGATTCTCATCCTCTGCCTCGTCTTCATTGATGCCTCCGTC
GCCTCATCCGGCGACTACTCCAGAAAAGCTCATCCACCTGATTCCGATCGTCGTCCTCTTCTGCTTCCTCGTTCTCTACCTCGTTTCTCACAATCCTTCG
CAGCCAAATTCAGGTGAGATGAATTCAATCGTTGACGAGCTTACCGCGCTCAAGGCCAAGGAAGGTTTGACGATTCGGAGCTTCAGGAACTTGCAAGAAA
CAGAGGAAGGCGGAAACAAGCACAAATCTCGGTCTCAGGGACACCGGAAATTCGCCGGTTTCTAA
AA sequence
>Lus10030980 pacid=23166795 polypeptide=Lus10030980 locus=Lus10030980.g ID=Lus10030980.BGIv1.0 annot-version=v1.0
MQRQSLGSPVSKLHFHGGSLPKHDAGIPTDDDSCKASSLSPYEDLKTAKPSSRRFSSSASSSLMPPSPHPATTPEKLIHLIPIVVLFCFLVLYLVSHNPS
QPNSGEMNSIVDELTALKAKEGLTIRSFRNLQETEEGGNKHKSRSQGHRKFAGF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G35470 unknown protein Lus10030980
[exp]
0 1
AT2G40100 LHCB4.3 light harvesting complex photo... Lus10037836
[exp]
3.0 0.7987
AT2G28470 BGAL8 beta-galactosidase 8 (.1.2) Lus10000271
[exp]
11.7 0.6807
AT1G29970 RPL18AA 60S ribosomal protein L18A-1 (... Lus10013704
[exp]
12.6 0.6825
AT5G02270 ABCI20, ATNAP9 ARABIDOPSIS THALIANA NON-INTRI... Lus10023792
[exp]
18.4 0.7454
AT1G08960 CCX5, AtCXX5, A... cation calcium exchanger 5, A... Lus10029938
[exp]
18.4 0.7501
AT5G06390 FLA17 FASCICLIN-like arabinogalactan... Lus10029353
[exp]
18.8 0.7675
AT4G32770 ATSDX1, VTE1 tocopherol cyclase, chloroplas... Lus10011696
[exp]
20.4 0.6949
AT5G42270 FTSH5, VAR1 VARIEGATED 1, FtsH extracellul... Lus10016003
[exp]
23.9 0.7213
AT4G39840 unknown protein Lus10024058
[exp]
31.0 0.7072
AT1G23880 NHL domain-containing protein ... Lus10030850
[exp]
32.2 0.6996

Lus10030980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.