Plant FIBer expression Database

Lus10030982 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G32260 219 / 3e-73 unknown protein
AT2G35480 181 / 3e-58 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035377
[exp]
381 / 3e-137 AT1G32260 214 / 3e-71 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G095600
[exp]
233 / 9e-79 AT1G32260 218 / 2e-72 unknown protein
Potri.001G138200
[exp]
232 / 4e-78 AT1G32260 216 / 9e-72 unknown protein
PFAM info
Representative CDS sequence
>Lus10030982 pacid=23166800 polypeptide=Lus10030982 locus=Lus10030982.g ID=Lus10030982.BGIv1.0 annot-version=v1.0
ATGGTGTTATGGGAGATCACGCTAGCCACGGCTTATTTCTTGGGACTAAAACGAACTTACAGGCTAGCTCTCAAGATGCAACGCAAGGTCGTCAGCCCTA
AGCGCCCCGAGATCCGTGGCTTTCTGCAAAGAAGAACACGTGCAATTTTTAGTGCAGCACTGTCAGTTCACCAGAACATACAACAGCGAGACTTAGAAGT
TGGTCGGAACCTGGGTAACTGGATTCTGCGGTGGCTTGACAGAATGAAGCCTTCTGCTGGGATCCGCCCTCATGATCCCACCAGCACCTCAAGCATACAC
AGGATACAGCAGTCGAACAACCTTAAAAGCTCTGCGACCAATCAAGCATCTAAAAACGGGGAATCCAACCGGCATCTGTTCTCGTCATACAGAGCTACAT
GGTCCAGACCCTTCCCTACTATTACAATGATGATAAGGCCACCAAGACCTGCTGGGAATATGACACAGTACAGGCACTTCAATGGTTTAGGGCCTGAGAT
TTTTCAACGAAATCCCATGATTGGAGCAAGTGGGTATGGTGGACTGCTTCGGAAGGATATAATGCAATACCTTCAGTACTAA
AA sequence
>Lus10030982 pacid=23166800 polypeptide=Lus10030982 locus=Lus10030982.g ID=Lus10030982.BGIv1.0 annot-version=v1.0
MVLWEITLATAYFLGLKRTYRLALKMQRKVVSPKRPEIRGFLQRRTRAIFSAALSVHQNIQQRDLEVGRNLGNWILRWLDRMKPSAGIRPHDPTSTSSIH
RIQQSNNLKSSATNQASKNGESNRHLFSSYRATWSRPFPTITMMIRPPRPAGNMTQYRHFNGLGPEIFQRNPMIGASGYGGLLRKDIMQYLQY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G32260 unknown protein Lus10030982
[exp]
0 1
AT1G53645 hydroxyproline-rich glycoprote... Lus10013717
[exp]
8.2 0.6527
AT1G22450 ATCOX6B2, COX6B CYTOCHROME C OXIDASE 6B2, cyto... Lus10020941
[exp]
8.4 0.5963
AT4G39400 DWF2, CBB2, BIN... DWARF 2, CABBAGE 2, BRASSINOST... Lus10006817
[exp]
10.2 0.5744
AT4G10750 Phosphoenolpyruvate carboxylas... Lus10000224
[exp]
14.1 0.6714
AT1G10030 ERG28 homolog of yeast ergosterol28 ... Lus10007238
[exp]
24.0 0.5561
AT1G22450 ATCOX6B2, COX6B CYTOCHROME C OXIDASE 6B2, cyto... Lus10008716
[exp]
48.5 0.5781
AT2G24190 SDR2 short-chain dehydrogenase/redu... Lus10019546
[exp]
50.1 0.5579
AT5G67090 Subtilisin-like serine endopep... Lus10042644
[exp]
76.5 0.5579
AT5G51920 Pyridoxal phosphate (PLP)-depe... Lus10002958
[exp]
80.7 0.4938
AT4G24190 AtHsp90-7, HSP9... SHEPHERD, HEAT SHOCK PROTEIN 9... Lus10034535
[exp]
94.2 0.5478

Lus10030982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.