Plant FIBer expression Database

Lus10030983 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11760 161 / 2e-51 MED32 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033295
[exp]
267 / 3e-93 AT1G11760 162 / 4e-52 unknown protein
Lus10034758
[exp]
266 / 7e-93 AT1G11760 164 / 9e-53 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G152700
[exp]
168 / 5e-54 AT1G11760 174 / 9e-57 unknown protein
PFAM info
Representative CDS sequence
>Lus10030983 pacid=23166722 polypeptide=Lus10030983 locus=Lus10030983.g ID=Lus10030983.BGIv1.0 annot-version=v1.0
ATGGTTAATGTGATGGATGACATGGCAGATTCACTAAACAATGCCTATCAGGAATTCGTTGCTGCAGCTGCGAATGTGATCGAGACCAAAGAGTTGGAAA
GCGCTCAGAAGACAGTCGGTACTGATACTTTGTTGGAGAACTTTAAGCATAAGTGGGAGTTTTTTAGGGTAGCATGTGATCAGGCCGAGGAGATTGTGGA
GTCTGCGAAACAAAGGATAGAGTCCGAATGCTTGGTTGATGAAGCCACTGGAACCGGAACTGCTACTGTTAATCCGAAACCTGGACAGACAGCAACGCCG
AGTCTTACTCCGATGAATGCAGTTCGGCTGGAGCAGATGAGTAAGGCTGTAAGGAGGCTTATGATCGAACTCCAACATGGGTCTGGAGCTGCTTCCGTTC
ACCAGGGCATTCACATCCTTTCCCTCTTTTTAATGCCTAGGCTCACGACCGTGGATGATATCTGCGCATTAGTCGAGCTACAGAAGGAGATGCATAATGT
AAATCGGGCTTCATAA
AA sequence
>Lus10030983 pacid=23166722 polypeptide=Lus10030983 locus=Lus10030983.g ID=Lus10030983.BGIv1.0 annot-version=v1.0
MVNVMDDMADSLNNAYQEFVAAAANVIETKELESAQKTVGTDTLLENFKHKWEFFRVACDQAEEIVESAKQRIESECLVDEATGTGTATVNPKPGQTATP
SLTPMNAVRLEQMSKAVRRLMIELQHGSGAASVHQGIHILSLFLMPRLTTVDDICALVELQKEMHNVNRAS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G11760 MED32 unknown protein Lus10030983
[exp]
0 1
AT5G23540 Mov34/MPN/PAD-1 family protein... Lus10011717
[exp]
3.2 0.8774
Lus10017219
[exp]
6.0 0.8504
AT5G48840 ATPTS, PANC ARABIDOPSIS THALIANA PANTOTHEN... Lus10038167
[exp]
7.7 0.7786
AT1G65660 SMP1 SWELLMAP 1, Pre-mRNA splicing ... Lus10007479
[exp]
8.1 0.8461
AT3G24530 AAA-type ATPase family protein... Lus10005293
[exp]
9.8 0.8545
AT3G14460 LRR and NB-ARC domains-contain... Lus10039577
[exp]
11.1 0.8482
AT4G25440 C3HZnF ZFWD1 zinc finger WD40 repeat protei... Lus10000559
[exp]
18.8 0.8455
AT1G20640 NLP4 Plant regulator RWP-RK family ... Lus10003318
[exp]
19.0 0.8216
AT5G17680 disease resistance protein (TI... Lus10010221
[exp]
21.5 0.8443
AT2G39260 binding;RNA binding (.1) Lus10030801
[exp]
22.2 0.8254

Lus10030983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.