Plant FIBer expression Database

Lus10030984 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G74340 120 / 2e-37 DPMS2, DPMS dolichol phosphate mannose synthase 2, dolichol phosphate-mannose biosynthesis regulatory protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035381
[exp]
158 / 2e-52 AT1G74340 120 / 2e-37 dolichol phosphate mannose synthase 2, dolichol phosphate-mannose biosynthesis regulatory protein-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G138100
[exp]
136 / 6e-44 AT1G74340 124 / 3e-39 dolichol phosphate mannose synthase 2, dolichol phosphate-mannose biosynthesis regulatory protein-related (.1)
Potri.003G095701
[exp]
53 / 6e-11 AT1G74340 37 / 6e-05 dolichol phosphate mannose synthase 2, dolichol phosphate-mannose biosynthesis regulatory protein-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07297 DPM2 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)
Representative CDS sequence
>Lus10030984 pacid=23166851 polypeptide=Lus10030984 locus=Lus10030984.g ID=Lus10030984.BGIv1.0 annot-version=v1.0
ATGGAATTAGCAGACAGAGCAGTTGGATTCCTCTTGTCAATAGTCAGCTTATCGATCTTCACATATTATACCTTCTGGGTTATTATCCTGCCGTTCGTAG
ACCATGATCACTTCATTCACCAATATTTCCTGCCACTGGAGTATGCCATATTCATACCCGTATTTGCTGGTGTCGCCCTTGTTTGCTTATTATCTCTCTT
TGTTGGGTCTGTCATGCTCAAATCCAAGAAGAAGAAGGCTTGA
AA sequence
>Lus10030984 pacid=23166851 polypeptide=Lus10030984 locus=Lus10030984.g ID=Lus10030984.BGIv1.0 annot-version=v1.0
MELADRAVGFLLSIVSLSIFTYYTFWVIILPFVDHDHFIHQYFLPLEYAIFIPVFAGVALVCLLSLFVGSVMLKSKKKKA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G74340 DPMS2, DPMS dolichol phosphate mannose syn... Lus10030984
[exp]
0 1
AT3G47810 ATVPS29, MAG1 VACUOLAR PROTEIN SORTING 29, M... Lus10012851
[exp]
1.4 0.8045
AT5G07960 unknown protein Lus10034695
[exp]
11.1 0.7812
AT5G40580 PBB2 20S proteasome beta subunit PB... Lus10014581
[exp]
18.6 0.7866
AT2G30410 TFCA, KIS TUBULIN FOLDING FACTOR A, tubu... Lus10031896
[exp]
23.8 0.7637
AT1G76860 Small nuclear ribonucleoprotei... Lus10011293
[exp]
27.7 0.7587
AT2G32980 unknown protein Lus10030015
[exp]
33.9 0.7720
AT1G09630 ATRAB-A2A, ATRA... ARABIDOPSIS RAB GTPASE A2A, RA... Lus10041116
[exp]
39.6 0.7525
AT3G17210 ATHS1 A. THALIANA HEAT STABLE PROTEI... Lus10037823
[exp]
67.5 0.7345
AT2G27970 CKS2 CDK-subunit 2 (.1) Lus10021405
[exp]
68.4 0.7355
AT1G06060 LisH and RanBPM domains contai... Lus10004152
[exp]
97.6 0.6574

Lus10030984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.