Plant FIBer expression Database

Lus10030985 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035382
[exp]
344 / 2e-118 AT4G15880 50 / 2e-06 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1)
Lus10002224
[exp]
62 / 1e-11 ND /
Lus10038717
[exp]
49 / 8e-07 AT5G65940 565 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3)
Lus10025344
[exp]
48 / 1e-06 ND /
Lus10022183
[exp]
46 / 8e-06 ND /
Lus10023136
[exp]
40 / 0.001 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10030985 pacid=23166718 polypeptide=Lus10030985 locus=Lus10030985.g ID=Lus10030985.BGIv1.0 annot-version=v1.0
ATGAAGACAACGACTAGAAAGCCACCTGCACAACAATCAGTTGAAGTTATGGAAGCTGGTGAGGTTACAGAGATCGTCAACATGGAAGCTGGTTCAGAAC
AAAACGTTGGTGTTGATGATGATATCATCGACTTGAGCACGACAACAAACAATTATAAGAGGACAACTGCGAATCGTGTAAGTTTGCGGCGCTTAGGAGG
TGTGATACGGAAGGAATTTTATTTGTCCAAACCCTTCAAGCTTGCTCTGGCTGATGATGAGCCGAAGCTCGTCAAGTATGTCCTCTCCAACCCAGAAGAT
AGAGATGCACTTGAAATCTGCCACTTCCCCGAAATGAAGATTCGGCGATTCGAGCTACATTCATTGACACCTCATAAGCAGTTGTGTAGTACCATTACCG
ATGCTTTTGCGCATCTGCTGAACAGAGAGGATATAAAGAAGAATGGAAAGGTTACTAGGTTTTGCTTCGAAACCAGCTGTGCGGTTGAAAATGGCGTAAA
AGGAGAAGAAGTTGACAAGTTGGATGACAATCAAAAGAAGAAACTTTGCACCAACTTCGACAAACTGGTTCATCTGGACTACTTACAAGGGGTGTCATGG
GAAGCTTGTGAATATGTAAGCCTGATCCGTTTTTACCAACCTATGATCATAAGCCATATGCTAATGTAG
AA sequence
>Lus10030985 pacid=23166718 polypeptide=Lus10030985 locus=Lus10030985.g ID=Lus10030985.BGIv1.0 annot-version=v1.0
MKTTTRKPPAQQSVEVMEAGEVTEIVNMEAGSEQNVGVDDDIIDLSTTTNNYKRTTANRVSLRRLGGVIRKEFYLSKPFKLALADDEPKLVKYVLSNPED
RDALEICHFPEMKIRRFELHSLTPHKQLCSTITDAFAHLLNREDIKKNGKVTRFCFETSCAVENGVKGEEVDKLDDNQKKKLCTNFDKLVHLDYLQGVSW
EACEYVSLIRFYQPMIISHMLM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10030985
[exp]
0 1
AT5G01630 BRCA2(V), ATBRC... BRCA2-like B (.1) Lus10000316
[exp]
5.5 0.7885
AT1G44110 CYCA1;1 Cyclin A1;1 (.1) Lus10014199
[exp]
5.6 0.7078
AT1G50910 unknown protein Lus10011153
[exp]
11.8 0.7592
AT1G67230 CRWN1, LINC1 CROWDED NUCLEI 1, little nucle... Lus10034076
[exp]
13.5 0.7676
AT3G45900 Ribonuclease P protein subunit... Lus10033275
[exp]
14.3 0.7534
AT2G39090 APC7, AtAPC7 anaphase-promoting complex 7, ... Lus10043419
[exp]
23.9 0.7031
AT3G53730 Histone superfamily protein (.... Lus10040849
[exp]
25.0 0.7634
AT2G25180 GARP ARR12 response regulator 12 (.1) Lus10005340
[exp]
25.4 0.7514
AT1G03687 DTW domain-containing protein ... Lus10018590
[exp]
30.4 0.7275
AT2G45490 ATAUR3 ataurora3 (.1) Lus10020580
[exp]
32.4 0.7361

Lus10030985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.