Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03000 187 / 3e-61 EF hand calcium-binding protein family (.1) AT1G32250 179 / 3e-58 Calcium-binding EF-hand family protein (.1) AT3G25600 122 / 6e-36 Calcium-binding EF-hand family protein (.1) AT1G18530 117 / 6e-34 EF hand calcium-binding protein family (.1) AT4G14640 107 / 5e-30 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT2G27030 105 / 2e-29 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G56800 105 / 2e-29 ACAM-3, CAM3 calmodulin 3 (.1) AT1G66410 105 / 2e-29 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G37780 105 / 2e-29 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT2G41110 105 / 2e-29 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004610 [exp] 179 / 3e-58 AT3G03000 243 / 3e-83 EF hand calcium-binding protein family (.1) Lus10035383 [exp] 176 / 6e-57 AT1G32250 152 / 8e-48 Calcium-binding EF-hand family protein (.1) Lus10004539 [exp] 144 / 3e-45 AT3G03000 164 / 2e-53 EF hand calcium-binding protein family (.1) Lus10017900 [exp] 122 / 8e-36 AT3G25600 252 / 4e-87 Calcium-binding EF-hand family protein (.1) Lus10039391 [exp] 107 / 6e-30 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10027283 [exp] 104 / 4e-29 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 104 / 4e-29 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 104 / 4e-29 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10041288 [exp] 104 / 4e-29 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138000 [exp] 209 / 5e-70 AT3G03000 221 / 8e-75 EF hand calcium-binding protein family (.1) Potri.003G095700 [exp] 207 / 3e-69 AT3G03000 220 / 1e-74 EF hand calcium-binding protein family (.1) Potri.015G052600 [exp] 123 / 2e-36 AT1G18530 213 / 8e-72 EF hand calcium-binding protein family (.1) Potri.010G132800 [exp] 122 / 8e-36 AT3G25600 229 / 4e-78 Calcium-binding EF-hand family protein (.1) Potri.010G080900 [exp] 107 / 2e-30 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.012G041000 [exp] 105 / 2e-29 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.015G032600 [exp] 105 / 2e-29 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.016G024700 [exp] 104 / 3e-29 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 104 / 3e-29 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 104 / 3e-29 AT3G43810 300 / 2e-106 calmodulin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10030986 pacid=23166837 polypeptide=Lus10030986 locus=Lus10030986.g ID=Lus10030986.BGIv1.0 annot-version=v1.0 ATGGAAGGAAGTCAGATCGCCGACCTCCGCCAGATCTTCCGCTCCTTCGACCGAGACAGCGACGGGAGCTTGACTCAGCTCGAATTAGGCTCCTTACTCC GATCACTGGGCCTCAGCCCCAGCCCTGACCAGCTCGACGCCCTGATCAAGACCGCCGACACAAACAGCAACGGCACGGTCGAGTTCTCTGAATTTCTGGC GCTTGTAGCGCCGGATCTCGTCCGGCAACATCCTGCCGAGGAGGAGAAGTCTCCGTACAGCGAGGAGAAGCTGAAGCAGCTGTTCAGGATGTTTGACCGC GACGGGAACGGGTACATAACGGCGGCCGAGCTGGCCCACTCGATGGCGAAGTTAGGGCACGCGCTGACGGCGGAGGAGCTCACGGGGATGATTACGGAGG CGGATACTGACGGCGACGGACGGATCAGTTTCCCCGAATTTTCCCGGGCTATTTCTTCCGCCGCGTTTCAGAACTCTTCTTGGGGTTGA
AA sequence Show only first row Show all	>Lus10030986 pacid=23166837 polypeptide=Lus10030986 locus=Lus10030986.g ID=Lus10030986.BGIv1.0 annot-version=v1.0 MEGSQIADLRQIFRSFDRDSDGSLTQLELGSLLRSLGLSPSPDQLDALIKTADTNSNGTVEFSEFLALVAPDLVRQHPAEEEKSPYSEEKLKQLFRMFDR DGNGYITAAELAHSMAKLGHALTAEELTGMITEADTDGDGRISFPEFSRAISSAAFQNSSWG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32250			Calcium-binding EF-hand family...		Lus10030986 [exp]	0	1
AT1G70420			Protein of unknown function (D...		Lus10013011 [exp]	2.2	0.9265
AT3G57120			Protein kinase superfamily pro...		Lus10027054 [exp]	2.8	0.9191
AT2G46150			Late embryogenesis abundant (L...		Lus10036403 [exp]	3.9	0.8713
AT2G23780			RING/U-box superfamily protein...		Lus10016796 [exp]	4.5	0.9109
AT5G60750			CAAX amino terminal protease f...		Lus10032326 [exp]	5.7	0.8852
AT5G60750			CAAX amino terminal protease f...		Lus10024708 [exp]	5.7	0.9183
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Lus10017537 [exp]	5.7	0.8707
AT5G17350			unknown protein		Lus10035268 [exp]	6.0	0.8687
AT1G78280			transferases, transferring gly...		Lus10010350 [exp]	7.1	0.8695
AT4G27280			Calcium-binding EF-hand family...		Lus10033753 [exp]	7.7	0.9131

Compare expression of checked genes

Lus10030986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.