Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35490 305 / 6e-102 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G22240 214 / 4e-67 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G04020 211 / 5e-66 FIB fibrillin (.1) AT2G46910 42 / 0.0004 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT3G26070 41 / 0.0006 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035384 [exp] 587 / 0 AT2G35490 357 / 5e-122 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10001099 [exp] 202 / 2e-62 AT4G22240 362 / 5e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10014790 [exp] 199 / 3e-61 AT4G22240 363 / 2e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10020982 [exp] 49 / 3e-06 AT3G26070 265 / 1e-89 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10036340 [exp] 47 / 7e-06 AT2G46910 325 / 6e-113 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10033514 [exp] 47 / 1e-05 AT5G09820 270 / 3e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10020860 [exp] 47 / 1e-05 AT5G09820 269 / 5e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G137900 [exp] 335 / 2e-113 AT2G35490 301 / 3e-100 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.003G095900 [exp] 325 / 1e-109 AT2G35490 334 / 5e-113 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.004G003200 [exp] 211 / 2e-65 AT4G22240 380 / 1e-132 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G209600 [exp] 46 / 2e-05 AT3G26070 253 / 7e-85 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.003G020700 [exp] 42 / 0.0003 AT3G26070 244 / 6e-81 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [flax] [poplar] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Lus10030987 pacid=23166734 polypeptide=Lus10030987 locus=Lus10030987.g ID=Lus10030987.BGIv1.0 annot-version=v1.0 ATGGCCCTTCTCTCCACAGCTCACTCTTCCCCCTTCTTCACCAAAACCCCCAATCCCACATCTCCAATTTCCACTCACAAACCCCCACCTTCCACCATCT TCTTCCCCAGAAACCCTAACCAATCTTCCCGATTCACATCCCTTCTCCCCCGCTCCTCAGCTTCCGATTCCAATCCGAAACCCGACAAGAGGCCTACTCC GGTCACTGATGAGTGGGGCGAGAAGTCAGAAACCGTGCCCGAAAGGCTCAAGGGCGCCGCGTCGGATCCTCCGGTGAACGAAGATGAGTGGGAGGTGAAG GACGAGGAGGAGGCTTACTCCGCCGGAGCCGGAAATGGAACTCCTTCTCCGGCCACTACAGCCGCAACTGAAGAAGAGAAGAAGAAGGACGACGCTATCG AGGAGCTGAAGAGGAGCTTGGCAGATACTGTTTTCGGTACGGATTTCGGGTTCCGGGCCGGCTCCGAGGTCCGAGCTGAAGTGTCCGAGTTGGTCAACCA ATTGGAGGCCGTGAATCCAACCCCTGCGCCCGTTGACGCGACGCTGTTGCTCGATGGGAACTGGATTCTGCTGTACACCGCATCTTCAGAGCTTCTGCCA CTTCTAGCAGTTGGCGGAACATCACCTTTGTTAAAGGTGAAAAGGATAACTCAATCGATCAACACCAGCAGTGCTACCATTGTGAACTCAACCACACTGT CGAGTCCGTTTGCTGATTTCTCATTCAGCGCAACTGCGAGTTTCGAAGTCCGGAGTCCTTCTAGAATACAGGTTCAATTCAAAGAAGGAACTCTGCAGCC TCCAGATGTGAAATCCAGCATCGATCTTCCCGACGAAGTGAACCTATTTGGGCAGAAGATCAGCTTGTCGCCTGTTCGTCAATCCCTCAGTCCTCTGCAA CAGCCTGTGGAGGCAATCTCGAGAGCCATTTCTGGGCAGTCTCCCCTCACGGTTCCGATTCCGGGTGGTCGATCAAGCTCGTGGCTTATAACTACCTACC TCGATGAGGATCTTCGGATTTCGAGAGGTGATGGCGGTCTTTTCATACTTGCCAAGGAAGGCAGCCCTCTTTTGTTTCAGTAA
AA sequence Show only first row Show all	>Lus10030987 pacid=23166734 polypeptide=Lus10030987 locus=Lus10030987.g ID=Lus10030987.BGIv1.0 annot-version=v1.0 MALLSTAHSSPFFTKTPNPTSPISTHKPPPSTIFFPRNPNQSSRFTSLLPRSSASDSNPKPDKRPTPVTDEWGEKSETVPERLKGAASDPPVNEDEWEVK DEEEAYSAGAGNGTPSPATTAATEEEKKKDDAIEELKRSLADTVFGTDFGFRAGSEVRAEVSELVNQLEAVNPTPAPVDATLLLDGNWILLYTASSELLP LLAVGGTSPLLKVKRITQSINTSSATIVNSTTLSSPFADFSFSATASFEVRSPSRIQVQFKEGTLQPPDVKSSIDLPDEVNLFGQKISLSPVRQSLSPLQ QPVEAISRAISGQSPLTVPIPGGRSSSWLITTYLDEDLRISRGDGGLFILAKEGSPLLFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35490			Plastid-lipid associated prote...		Lus10030987 [exp]	0	1
AT1G50250		FTSH1	FTSH protease 1 (.1)		Lus10012277 [exp]	1.4	0.9440
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10014934 [exp]	1.7	0.9444
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	3.5	0.9405
AT3G47070			unknown protein		Lus10018216 [exp]	6.3	0.9155
AT1G33110			MATE efflux family protein (.1...		Lus10020307 [exp]	6.3	0.9099
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10028633 [exp]	6.6	0.9179
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	8.8	0.9113
AT2G35490			Plastid-lipid associated prote...		Lus10035384 [exp]	10.4	0.9017
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10040246 [exp]	11.2	0.8861
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10000593 [exp]	12.7	0.9137

Compare expression of checked genes

Lus10030987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.