Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46910 851 / 0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT3G48430 244 / 2e-67 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) AT2G34880 228 / 1e-63 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT4G20400 227 / 2e-62 PKDM7B, JMJ14 JUMONJI 14 (.1.2) AT1G30810 222 / 3e-61 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT1G08620 218 / 1e-58 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT5G04240 207 / 3e-55 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT1G63490 197 / 5e-52 transcription factor jumonji (jmjC) domain-containing protein (.1) AT2G38950 150 / 2e-37 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035385 [exp] 1561 / 0 AT5G46910 843 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10019482 [exp] 257 / 1e-71 AT3G48430 984 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10042566 [exp] 227 / 2e-61 AT3G04490 1382 / 0.0 unknown protein Lus10022024 [exp] 223 / 3e-60 AT3G04490 1370 / 0.0 unknown protein Lus10008063 [exp] 212 / 2e-57 AT1G30810 901 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10043332 [exp] 212 / 8e-57 AT3G48430 877 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10008495 [exp] 211 / 4e-56 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10009218 [exp] 206 / 2e-54 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10037989 [exp] 204 / 3e-54 AT5G04240 988 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G096100 [exp] 1056 / 0 AT5G46910 924 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.001G137700 [exp] 1049 / 0 AT5G46910 893 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.012G092400 [exp] 273 / 8e-77 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.015G089000 [exp] 272 / 9e-77 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.019G018700 [exp] 235 / 2e-64 AT1G08620 1260 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.013G046700 [exp] 230 / 7e-63 AT1G08620 1281 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.003G126600 [exp] 217 / 2e-58 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.001G440900 [exp] 213 / 3e-57 AT4G20400 733 / 0.0 JUMONJI 14 (.1.2) Potri.011G155100 [exp] 211 / 5e-57 AT4G20400 707 / 0.0 JUMONJI 14 (.1.2) Potri.010G224700 [exp] 207 / 5e-55 AT5G04240 956 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02375 [flax] [poplar] JmjN jmjN domain CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase CL0029 [flax] [poplar] PF02928 [flax] [poplar] zf-C5HC2 C5HC2 zinc finger
Representative CDS sequence Show only first row Show all	>Lus10030988 pacid=23166829 polypeptide=Lus10030988 locus=Lus10030988.g ID=Lus10030988.BGIv1.0 annot-version=v1.0 ATGATGAGTAGAAGTGGAGGAGATGCTTTGAGGACTTCAGCATCATGCGGTGTTAGATTGCCTGGTAATGCAGGTTCAACTGTTCATCCAAACAGTAGTA CGAGTGGAAATGATGCGTGCTTGAAGCGGAAAGTGGATAAGTTTGATACTAGTGACTTGGAATGGATGGAGAAAATTCCTGAATGCCCTGTGTATTACCC AACGAGGGAGGAGTTTGAGGATCCCTTAGTGTACTTGCAGAAAATTGCAGTTGAAGCTTCAAAATATGGTATTTGCAAGATCGTTTCTCCCTTGAGTGCT TCTGTTCCTGCTGGGGTTGTATTAATGAGGGAAAAAGCAGGATTTAAGTTCACGACCAGAGTACAGCCGCTGCGTCTTGCAGAGTGGGATAATGATGACC GAGTCACATTTTTTATGAGTGGAAGGAACTACACATTTCGTGATTTTGAGAAAATGGCGAACAAGGTTTTTTCACGTAGGTACTGTAGTTCTGGTTGCCT CCCTGCAACCTACATGGAGAAAGAATTTTGGCAGGAAATTGCATGTGGAAAGACCGAAACAGTTGAATATGCATGTGATGTTGATGGCACCGCCTTTTCA TCATCTCCCACTGATCCACTGGGAAGTAGCAAATGGAATTTGAAGAATCTATCACGGCTGCCGAAGTCTGTTTTGCGTCTTCTGGAGACTGCCATTCCAG GAGTAACCGATCCAATGCTATATATTGGGATGTTATTTAGCGTGTTTGCTTGGCACGTGGAAGATCATTATTTGTACAGTATCAACTACCATCACTGTGG GGCAGCCAAAACTTGGTATGGGATTCCTGGCCATGCAGCACTTGGGTTTGAAAAGGTGGTCAGGGAACATGTATACACACGTGATATTATGTCCGCTGAC GGTGAGGATGGAGCTTTTGATGTGCTTTTGGGGAAAACAACTCTTTTCCCACCAAATATACTGATGGAACATGACGTCCCCGTCTACAAGGCTGTCCAGA AGCCCGGCGAGTATGTCATAACATTCCCAAGAGCATATCATGCAGGTTTTAGCCATGGTTTTAACTGCGGCGAGGCTGTGAACTTTGCCATTGGTGATTG GTTCCCTTTGGGGTCTGTGGCGAGCCGGCGTTATGCCCTCCTCAACAGGATGCCTTTGCTGCCTCATGAAGAGCTTCTCTGTAAAGAAGCAATGCTTCTC TACCCCCGTTTGCAACTTGAAGACTCAGATTGTTCCTTGGGGGACTTGGTCTCTCAACATAGTGTTAAAGTCTCGTTTGTGAAACTGATCCGTTTCCAGC ATCGTGCTCGCTGGTGTTTCGCGAGATCAGGTGAATGCACTGGAGTTCAGACAAACACGTTTGGTACCATCCTCTGCAGCTTATGCAAAAGGGACTGTTA TCTAGCTTTCATCAATTGCAACTGTGATTTGCATCCTGTGTGCCTTCGTCATGATGCTGCATCACTTGATTTCTCTTGTGGGAGAAAGTTTACTTTGTTT TTGAGAGAGGATGTTGCAGATATGGAAGTTGCAGCTAAGAAGTTTGAGGATGAAGACAGTGTTCGTCAGGAGATACAAGCTCCGTCTCGTTCTAGCGATG ATTGGTGCTCATACCCTTCACCTTATACGTGCCAGAATGTGATAAAGACCGAATACTCTCCTTACTGTCAAATAAAATATGAGTTTTGTGCTCATTCTGC ATCACTAAAACCTTGTCAGGGTTCCTTTGACAGCCGTGGAAATATAGACATTAACTCTTCTGTTCATTCCCAAGGGCTGACAGTTGACCACTCTTCTCTA GCATTTGATGCTAAGGAGCTGGGTGACCTAGGCACCTCCGGGAGTATTCATTTTAAAGATCTGATGCGAGAAGTATCAGATACGAGTGCTGGACATTCAG GATCCTCTGAGTTAACTGATGCTCATTCAAAGAGTCAGCCGGACAATCATGTTGCAGAGATTAGGCCTCATGTGGATCGTTATTGTGATGATTCAGATTC TGAAATATTTAGAGTAAAGCGTCGGTCTTCACTGAAGGTCCAAAAACGAGCTGTCAGTGATTCCTCTTCCCCGAGGAACCCTGAGTATCAGGGGCTTAAA CGATTGAGGAAGCACCAGGGAGATGGAGGAAGAAGCGGACAATCAACGTCAGAGAACCGTAGAGTTGGCGGACCGCTTCGCAATTCGACATTGATATCCA GCACAGTTTACAGAGAATCTCCAGGTAGTAGTAGTAGTACTATGTTGAAAGAGAGAGAGAGATGGTCGAGGGGAAGTCAGACTCCCATCTCAATTAAGAT TAAGAAACCGGGCAATGAGCAAAGAGAGTATCGAAGCGTAAATAGATTCCAACATGATGAATTAGGGAGAAGGGAGGTACCCTCAATAGAGATGACAGGG GCTAAGCGTCTAAAGGTCAGAGGCCCCTCACATTCATATATAAGGTCAGAGAGAGCAGATTAG
AA sequence Show only first row Show all	>Lus10030988 pacid=23166829 polypeptide=Lus10030988 locus=Lus10030988.g ID=Lus10030988.BGIv1.0 annot-version=v1.0 MMSRSGGDALRTSASCGVRLPGNAGSTVHPNSSTSGNDACLKRKVDKFDTSDLEWMEKIPECPVYYPTREEFEDPLVYLQKIAVEASKYGICKIVSPLSA SVPAGVVLMREKAGFKFTTRVQPLRLAEWDNDDRVTFFMSGRNYTFRDFEKMANKVFSRRYCSSGCLPATYMEKEFWQEIACGKTETVEYACDVDGTAFS SSPTDPLGSSKWNLKNLSRLPKSVLRLLETAIPGVTDPMLYIGMLFSVFAWHVEDHYLYSINYHHCGAAKTWYGIPGHAALGFEKVVREHVYTRDIMSAD GEDGAFDVLLGKTTLFPPNILMEHDVPVYKAVQKPGEYVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGSVASRRYALLNRMPLLPHEELLCKEAMLL YPRLQLEDSDCSLGDLVSQHSVKVSFVKLIRFQHRARWCFARSGECTGVQTNTFGTILCSLCKRDCYLAFINCNCDLHPVCLRHDAASLDFSCGRKFTLF LREDVADMEVAAKKFEDEDSVRQEIQAPSRSSDDWCSYPSPYTCQNVIKTEYSPYCQIKYEFCAHSASLKPCQGSFDSRGNIDINSSVHSQGLTVDHSSL AFDAKELGDLGTSGSIHFKDLMREVSDTSAGHSGSSELTDAHSKSQPDNHVAEIRPHVDRYCDDSDSEIFRVKRRSSLKVQKRAVSDSSSPRNPEYQGLK RLRKHQGDGGRSGQSTSENRRVGGPLRNSTLISSTVYRESPGSSSSTMLKERERWSRGSQTPISIKIKKPGNEQREYRSVNRFQHDELGRREVPSIEMTG AKRLKVRGPSHSYIRSERAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46910			Transcription factor jumonji (...		Lus10030988 [exp]	0	1
AT5G46910			Transcription factor jumonji (...		Lus10035385 [exp]	1.0	0.8716
AT2G44500			O-fucosyltransferase family pr...		Lus10037475 [exp]	2.0	0.7953
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10041978 [exp]	3.5	0.7578
AT1G68190	CO		B-box zinc finger family prote...		Lus10035257 [exp]	4.5	0.7436
AT1G61140		EDA16	embryo sac development arrest ...		Lus10018465 [exp]	7.1	0.7210
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011859 [exp]	10.2	0.6881
AT3G46640	GARP	PCL1, LUX	PHYTOCLOCK 1, LUX ARRHYTHMO, H...		Lus10040780 [exp]	13.8	0.6714
AT1G18660			zinc finger (C3HC4-type RING f...		Lus10019075 [exp]	14.0	0.6495
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10043017 [exp]	14.3	0.7196
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10007319 [exp]	16.7	0.6717

Compare expression of checked genes

Lus10030988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.