Plant FIBer expression Database

Lus10030990 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35500 446 / 3e-154 SKL2 shikimate kinase-like 2, shikimate kinase like 2 (.1)
AT4G39540 53 / 2e-07 ATSK2 shikimate kinase 2 (.1.2.3)
AT2G21940 51 / 1e-06 ATSK1 shikimate kinase 1 (.1.2.3.4.5)
AT3G26900 50 / 2e-06 ATSKL1 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035389
[exp]
389 / 2e-132 AT2G35500 240 / 2e-76 shikimate kinase-like 2, shikimate kinase like 2 (.1)
Lus10035843
[exp]
49 / 6e-06 AT2G21940 304 / 5e-103 shikimate kinase 1 (.1.2.3.4.5)
Lus10036626
[exp]
47 / 3e-05 AT5G64860 482 / 1e-165 disproportionating enzyme (.1)
Lus10035171
[exp]
45 / 9e-05 AT3G26900 203 / 1e-64 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G096600
[exp]
500 / 2e-175 AT2G35500 447 / 5e-157 shikimate kinase-like 2, shikimate kinase like 2 (.1)
Potri.017G062800
[exp]
46 / 3e-05 AT3G26900 291 / 9e-99 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0190 HSP20 PF04969 CS CS domain
CL0023 P-loop_NTPase PF01202 SKI Shikimate kinase
Representative CDS sequence
>Lus10030990 pacid=23166788 polypeptide=Lus10030990 locus=Lus10030990.g ID=Lus10030990.BGIv1.0 annot-version=v1.0
ATGGCGGCTGCTACCGCCGCCGGTGCCAAACTCCGTTCCTTTCATCAAGACTCAATAACTAAATCCAGCCTCCGACGACGACAACCCACCACCTCCTTTC
TCTCATTCGCGCCCATTTCCACTTTCACTACTATCAATTACTCCTTCTCTCCCTCCCGCCGTTCCTTGAAGCCCGACTCTCCCTTCTTCTGCAAATGTAT
CTCCACCGCCGCTTCCAACACCCATTACGAGTTCACTGATGGTTCTTCCGAGATCGAATTGAGACTGTCACTTACTGGACAAACACTCACTGGACAAGAC
ATTCCAGACCCTAAGAACGTGTTTGTGGACGCAGATGGGACGTCGTTGAGAGTCTCCGTTCTACGCGATGGTTCCATCGTCACGCTGATGGAGACTAATC
AGTTGTTTGATAGGGTTAAGCCTTCTGAAACTATATGGTATATAGATGATGATGAGATTGTGATCAACTTGAAGAAGCATGATCCGGGTTTGAAATGGCC
TGACATTATTGAATCATGGGAGTCCCTAAGTGCATCAGTTAAGCAGCTTCTGAAAGGAACTTCGGTGTTTATCGTTGGTGATTCCACCGAAGTGAACCAG
AGGGTGGTTAGAGAACTTGCAGTTGGTCTCGGGTATACGCCCCTGGATACAAAGGAGTTGCTGGAAACTCTCGCTAAGCAAACAATCGACTCTTGGATCC
TTGCTGAAGGCTTTGACTCTGTAGCTGAAGCTGAAGGTTCAGTGCTGGAAAGCCTGAGCAGCAATGCTCGTGCTGTTGTATCGACATTAGGAGGGAAGTG
CGGAGCTGCAGGAAGGACCAGCAAGTGGCAGCATCTTCATGCAGGTTTTAGTGTCTGGATTTCGCAAACAGAAGCTATGGATGAAGATACAGCTCAGGAG
GAAGCCAGGAAGAACATGCAAGACAGCAATAGCGGCTACTCAAAAGCTGATGTGGTAGTCAAGCTCCAAGGATGGGACCCTGATCATGCCAAAAGCGTAG
CACAAGCATCGTTGAGTGCCCTCAAACGTCTGATTTTGTCAGACAAGGAACTCCCAGGCAAGAAGAGCCTGTACATAAGATTGGGTTGTAGAGGCGATTG
GCCAGACATCAAGCCACCAGGCTGGAATCCGGCTACCGGAGTGGGTACAACGGTGTCATCGAGACGTTCTAAAGACCCGGAAACAAACAAGCTTAGACAA
GTTGGAACTTATCCGTCCAGAAAATACTACTACGATTACTGCCCAACAGCAGACCTAAACAAACCATATATGCATATTCTCCCAAGGGCGAGCTTTAACC
TCGTGGCTGCTGCTTCTGCTACTGTGCATTTTCACCGGCTCCTTCAGGCTTCGTTACCACCTGTAAAATCGACTCAACTTGGGATCCTTGCTGAAGGCTT
TGACCCCTTAGCTGAAGCTGAAGGTTTGGTGCTAGAAAGCCTGACCAGCAATGCTCATGCTGTTGTATCGACATTGGGAGGGAAGTGCGGAGCTGCAGGA
AGGACCAGCAAGTGGCAGCATTTTCACGCAGGGTTTAGTGTCTGGATTTCACAGACAGCAGCAGCAGAAGCCTCAAACATAGCAAGGACATCAAGTTCTG
ACCTAGCAAAAGAATGGACATAA
AA sequence
>Lus10030990 pacid=23166788 polypeptide=Lus10030990 locus=Lus10030990.g ID=Lus10030990.BGIv1.0 annot-version=v1.0
MAAATAAGAKLRSFHQDSITKSSLRRRQPTTSFLSFAPISTFTTINYSFSPSRRSLKPDSPFFCKCISTAASNTHYEFTDGSSEIELRLSLTGQTLTGQD
IPDPKNVFVDADGTSLRVSVLRDGSIVTLMETNQLFDRVKPSETIWYIDDDEIVINLKKHDPGLKWPDIIESWESLSASVKQLLKGTSVFIVGDSTEVNQ
RVVRELAVGLGYTPLDTKELLETLAKQTIDSWILAEGFDSVAEAEGSVLESLSSNARAVVSTLGGKCGAAGRTSKWQHLHAGFSVWISQTEAMDEDTAQE
EARKNMQDSNSGYSKADVVVKLQGWDPDHAKSVAQASLSALKRLILSDKELPGKKSLYIRLGCRGDWPDIKPPGWNPATGVGTTVSSRRSKDPETNKLRQ
VGTYPSRKYYYDYCPTADLNKPYMHILPRASFNLVAAASATVHFHRLLQASLPPVKSTQLGILAEGFDPLAEAEGLVLESLTSNAHAVVSTLGGKCGAAG
RTSKWQHFHAGFSVWISQTAAAEASNIARTSSSDLAKEWT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G35500 SKL2 shikimate kinase-like 2, shiki... Lus10030990
[exp]
0 1
AT3G55280 RPL23A2, RPL23A... RIBOSOMAL PROTEIN L23A2, ribos... Lus10025302
[exp]
3.5 0.9392
AT4G15510 Photosystem II reaction center... Lus10000614
[exp]
4.2 0.9430
AT1G68590 Ribosomal protein PSRP-3/Ycf65... Lus10035036
[exp]
4.8 0.9475
AT2G33180 unknown protein Lus10023686
[exp]
4.9 0.9457
AT3G55280 RPL23A2, RPL23A... RIBOSOMAL PROTEIN L23A2, ribos... Lus10024430
[exp]
9.9 0.9297
AT1G01080 RNA-binding (RRM/RBD/RNP motif... Lus10030194
[exp]
10.1 0.9376
AT1G08980 ATTOC64-I, ATAM... ARABIDOPSIS THALIANA TRANSLOCO... Lus10029941
[exp]
10.4 0.9297
AT2G01755 unknown protein Lus10005230
[exp]
11.4 0.9321
AT5G53490 Tetratricopeptide repeat (TPR)... Lus10007788
[exp]
11.6 0.9389
AT2G17972 unknown protein Lus10026591
[exp]
14.4 0.8716

Lus10030990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.