Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32230 365 / 2e-119 ATP8, CEO1, RCD1, AtRCD1 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) AT2G35510 296 / 9e-93 SRO1 similar to RCD one 1 (.1) AT1G23550 103 / 4e-24 SRO2 similar to RCD one 2 (.1) AT1G70440 100 / 3e-23 SRO3 similar to RCD one 3 (.1) AT5G62520 89 / 1e-19 SRO5 similar to RCD one 5 (.1.2) AT3G47720 68 / 5e-12 SRO4 similar to RCD one 4 (.1) AT5G43130 45 / 0.0001 TAF4, TAF4B TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035390 [exp] 1048 / 0 AT2G35510 352 / 5e-114 similar to RCD one 1 (.1) Lus10013012 [exp] 109 / 9e-26 AT1G23550 218 / 1e-68 similar to RCD one 2 (.1) Lus10030878 [exp] 108 / 2e-25 AT1G23550 223 / 1e-70 similar to RCD one 2 (.1) Lus10029152 [exp] 107 / 4e-25 AT1G23550 219 / 4e-69 similar to RCD one 2 (.1) Lus10030611 [exp] 105 / 2e-24 AT1G23550 219 / 7e-69 similar to RCD one 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G137200 [exp] 641 / 0 AT1G32230 479 / 6e-163 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) Potri.003G096700 [exp] 595 / 0 AT1G32230 451 / 4e-152 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) Potri.002G112300 [exp] 176 / 8e-49 AT2G35510 185 / 4e-52 similar to RCD one 1 (.1) Potri.006G231100 [exp] 111 / 1e-26 AT1G23550 207 / 2e-64 similar to RCD one 2 (.1) Potri.006G231500 [exp] 110 / 2e-26 AT1G23550 219 / 2e-69 similar to RCD one 2 (.1) Potri.015G076500 [exp] 107 / 3e-25 AT5G62520 251 / 2e-81 similar to RCD one 5 (.1.2) Potri.012G081100 [exp] 105 / 3e-24 AT5G62520 243 / 2e-78 similar to RCD one 5 (.1.2) Potri.018G055100 [exp] 102 / 1e-23 AT1G23550 208 / 5e-65 similar to RCD one 2 (.1) Potri.006G231600 [exp] 100 / 1e-22 AT1G23550 185 / 6e-56 similar to RCD one 2 (.1) Potri.005G149701 [exp] 72 / 5e-15 AT2G35510 81 / 4e-19 similar to RCD one 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12174 [flax] [poplar] RST RCD1-SRO-TAF4 (RST) plant domain PF02825 [flax] [poplar] WWE WWE domain
Representative CDS sequence Show only first row Show all	>Lus10030991 pacid=23166855 polypeptide=Lus10030991 locus=Lus10030991.g ID=Lus10030991.BGIv1.0 annot-version=v1.0 ATGGAAACCAAGTTAGGAAAGGTATTGGATAGGAGAAGCAAGGTTATTCTCGGCTTGAAGAGAAAGCGAGCATATCGCTCTGCAGCTTTTTTTGCTAGAG GCCCCCAGACAGGTTTGCCCGAGTGGCCTGCTGTGCATTCTACTCACTTCCTCGGGAAACGAAGGAAAGTCAATGGGTGCCTGGGTGAGCCTGTGCTCTG TGGGTTTAAATGCAAGAAATCTCTACTCCAGCGTTATCTGAATTTTTCAAGGACTGGAGTGCCAGAACGTCTTATGTTCTATCAGAATGGCGAATGGACC AACTTTTCTGAAGACCTAGTTGCATTGGTAAGAGATGATCTCCGTTTGAAGAAGGGAGTTATTGAAGTTGAGTTTGAAGGGCATCGCTGTATGCTTGATT TCTTGCATATGTGTCGACTTGACTTGAAGACAGGCTTGCAGCAACCAATTGCATGGATTGATGAAGCAGGTGCATGCTTCTTTCCTGAAATTTATGGTGA CGATGACGAACTAAGTAGTCTGAATGATGATGGAAACAGTGGTAGTGGACCCCACGAGATTAAACTGCAACTTGAAATCGACATAAATGGGGTGGACCAG TCTAAACTAAAGGAGAGTAGTGGAGAGTCTACTGCTCTTGTTAAGCATATCCATATTGCTCCCAGACCTGGTAGTAATCAATATGATGTAGAGGTGGAAG ATAGTTCCAACAAGTCTGATGATTATGTTGTTGAAGCTGTTGTGGGAGACCAACAGACTAAACCAGTGCTAGTCTCTAAGGCTCAATCTTCTGATGTGAA ATTCGATTCTCAGTCTCTGCAGAAACTGTTTATTGATGGCATGAAATGTTTTGATGGTGCTGAGATACTTGAAATTATTCAATGCCAAAGCACTTCCTTA CAAGATCGATTAGAAATTTTTGAGAAGCAGATAAAGCTCACAGGAAAGTGCCGTGGTGATCCGAATGTTCGATATGCTTGGCTTTCTGCCACTAAAGCCG CTCTGCCTACACTAATGACGTATGGACTAGGACATTGCCCTTCTGTGACTAGGTTCAGATATGCTATCGGCATTCATCTATCTGCTGCAGATCACTGCCA CATCAGTGCCAGTGATTGCGATATTGACGAAAATGGAACTCGACATTTGGTATTTTGCCGTGTGATAATGGGAAATATGGAGCCTCTTCAGCATGGGAGT CGGATGTTCCATCCTAGCAGTGAAAAGTTTGATAATGGAGTGGATGATCTTCAAAATCCAAGGCAGTTTATAGATTGGAATATGAATGCACACACCCATA TGTTCCCAGAATTTGGTGTTAGTTTCAAGGTCTCTTCCAATGGTAAAGGGCTTGCTGTTGGGAGTGAGAGCAAGTACGTTGCTTCAGGTGTCACCAGTAC TACACAGGGAGTTAAAGCGAGTTGGCCCTTGAACAAGTCTCCTAGGGTGGATTTAAACTTACCAGTACAATCCCCTAAGGTGGACCTTAATTTAGCCCTT GCATCTGATCAGGCTAGCGAAAGTCAACCACTTTCAGATTGTGTGACATCTGTTTGGAATGGAAATAGTTTGGGTTCAAGCGATCCGGGGAATCGTAATT ATCCTAATTGGATTCCATTCCCTGTACTCTTTACTGCCATCTCAAAGAAAATTGCTCGGAGAGACATGGAACTTATTATTTCTAGTTATGAGGAATTGCG GGCCAAAAGGATTAGCAGAAAAGACTTTACTAAACGACTGAGATCAATAGTTGGGGATACTTTGCTGAAGTCGGCACTATTGAATATGAACGAAGGAAAG GTATGA
AA sequence Show only first row Show all	>Lus10030991 pacid=23166855 polypeptide=Lus10030991 locus=Lus10030991.g ID=Lus10030991.BGIv1.0 annot-version=v1.0 METKLGKVLDRRSKVILGLKRKRAYRSAAFFARGPQTGLPEWPAVHSTHFLGKRRKVNGCLGEPVLCGFKCKKSLLQRYLNFSRTGVPERLMFYQNGEWT NFSEDLVALVRDDLRLKKGVIEVEFEGHRCMLDFLHMCRLDLKTGLQQPIAWIDEAGACFFPEIYGDDDELSSLNDDGNSGSGPHEIKLQLEIDINGVDQ SKLKESSGESTALVKHIHIAPRPGSNQYDVEVEDSSNKSDDYVVEAVVGDQQTKPVLVSKAQSSDVKFDSQSLQKLFIDGMKCFDGAEILEIIQCQSTSL QDRLEIFEKQIKLTGKCRGDPNVRYAWLSATKAALPTLMTYGLGHCPSVTRFRYAIGIHLSAADHCHISASDCDIDENGTRHLVFCRVIMGNMEPLQHGS RMFHPSSEKFDNGVDDLQNPRQFIDWNMNAHTHMFPEFGVSFKVSSNGKGLAVGSESKYVASGVTSTTQGVKASWPLNKSPRVDLNLPVQSPKVDLNLAL ASDQASESQPLSDCVTSVWNGNSLGSSDPGNRNYPNWIPFPVLFTAISKKIARRDMELIISSYEELRAKRISRKDFTKRLRSIVGDTLLKSALLNMNEGK V

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	0	1
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10027600 [exp]	1.0	0.9513
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	1.4	0.9494
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10014794 [exp]	2.6	0.9342
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	3.0	0.9485
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10026356 [exp]	3.2	0.9378
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	5.3	0.9436
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10043123 [exp]	5.5	0.9311
AT2G01460			P-loop containing nucleoside t...		Lus10027063 [exp]	5.7	0.9341
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	5.7	0.9282
AT4G28600		NPGR2	no pollen germination related ...		Lus10003618 [exp]	6.2	0.9257

Compare expression of checked genes

Lus10030991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.