Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32130 509 / 6e-178 HNI9, ATIWS1 HIGH NITROGEN INSENSITIVE 9, ARABIDOPSIS THALIANA IWS1 \(FROM YEAST INTERACTS WITH SPT6\), Transcription elongation factor (TFIIS) family protein (.1), Transcription elongation factor (TFIIS) family protein (.2) AT4G19000 243 / 2e-75 ATIWS2 ARABIDOPSIS THALIANA IWS2 \(FROM YEAST INTERACTS WITH SPT6\), Transcription elongation factor (TFIIS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035391 [exp] 853 / 0 AT1G32130 567 / 0.0 HIGH NITROGEN INSENSITIVE 9, ARABIDOPSIS THALIANA IWS1 \(FROM YEAST INTERACTS WITH SPT6\), Transcription elongation factor (TFIIS) family protein (.1), Transcription elongation factor (TFIIS) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G135900 [exp] 598 / 0 AT1G32130 531 / 0.0 HIGH NITROGEN INSENSITIVE 9, ARABIDOPSIS THALIANA IWS1 \(FROM YEAST INTERACTS WITH SPT6\), Transcription elongation factor (TFIIS) family protein (.1), Transcription elongation factor (TFIIS) family protein (.2) Potri.003G097700 [exp] 595 / 0 AT1G32130 526 / 0.0 HIGH NITROGEN INSENSITIVE 9, ARABIDOPSIS THALIANA IWS1 \(FROM YEAST INTERACTS WITH SPT6\), Transcription elongation factor (TFIIS) family protein (.1), Transcription elongation factor (TFIIS) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08711 [flax] [poplar] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Lus10030992 pacid=23166841 polypeptide=Lus10030992 locus=Lus10030992.g ID=Lus10030992.BGIv1.0 annot-version=v1.0 ATGGCGGACAATCCATATCGCGATGAGGACGGAGAGCCTTTGATGGATTACGATGACATCCCATCGGATGGCGGCCAATCCCCAGGAGTTCACCACGGCG GTGAAGATCATTTTCTCGACGACGACTTCGAGGACGGTTCCAGAACTCCTGTTTACGATAAGGCGTCGAAGCCGAGGAAGAGGCTGGTGAAGAAGAGCGG CGGAGGCGGAGGGAGAGACAGTTACGATGCCCCGGCTGAGCTGCTGGATGACTACGACGATCGGCAAGGGAGGGATGGATCGTCGGAGGGGAAGAAGAGG AAGAAGTTCGGGAGAGATTTGATCGGGAGCTCAGGGAAGGAGCGGAAGAGGTTCTCCTCAGGGGAGAGTCAGTACGGTAACAGTTCGAAATCTGGAGGGG GGTCGAAGAGGGGAATGTATTCGGAGAGGTTAGTTGCTGGAAAGGATGATGGTGAAGTTAAGGAGATGTGGGATACCATTGCTGGTGGCGATTCAGAGGA TGATCAAGAGGGCTTGAGGAATATGGATGATGATAACTTCATTGATGATACTGGTGTAGATCCAGCCGATCGGTATGGAAGTGACAATGAACCACGCTCT CCTGGTGTTCATCCTCAGGCAGAGGAGGGTGAAGACGATGACGAAGTAAACCGGATGTTTAAGATTGGCAAGAAAAAAAAAAAGAACGAGAGAAGCCCTG CAGAAGTTGCATTGCTAGTGGAGAATGTCATGGCTGAGCTTGAAGTCACTGCTGAGGAAGATGCAAATCTCAATATACAGGGAAAACCTGCTATTAACAA ACTCAAGAAGTTGCCTCTCCTCATTGACGTTCTATCCAAGAAGCAACTTCAGCAAGAGTTCATAGATCATGGAGTTCTAACCCTGCTTAAAAATTGGCTC GAGCCCCTTCCTGATGGTAGCTTGCCCAACATAAACATTCGTGCAGCAATGCTTAGAATCCTAACTGATCTTCCTCTCGATCTGGAGCAGTATGATAGAA GGGAGCAGTTGAAGAAAAGTGGACTTGGAAAGGTTATAATGTTCTTGTCAAAGTCTGATGAGGAAACTACTTCGAATAGAAAAATGGCCAAGGATCTCGT CGATAAATGGAGTCGACCGATATTCAACAAGAGCACAAGGTTTGAGGACATGCGGGGCGTCGAAGATGACCGAGCTTACAGAAGACCTCCCGTGAGAAGG CCAGTGAATAATGGAGGTGGGATGGAATCAAGAGATGGTGATCTTGATTTGGACATGTCACGGGGAAGAAACTCTGGACAGTCATCATCATCTAAGCAAC CGCAACTAACTTCACGTCCCGAAGCGACACCATTGGATTTCATAGTTCGTCCACAGTCCAAGATCGATCCTGAAGAAGTCCGAGCACGAGCTAAACAAGG TGCTGCTCAGGATCAACGGAGAGCAAAGATGAACAAGAAGTTACAGCAGCTGAAGGCACCTAAAAAGAAGAATTTACAAGCTTCAAGGCTCAGTGTTGAA GGCCGAGGAATGATCAAGTACTTGTGA
AA sequence Show only first row Show all	>Lus10030992 pacid=23166841 polypeptide=Lus10030992 locus=Lus10030992.g ID=Lus10030992.BGIv1.0 annot-version=v1.0 MADNPYRDEDGEPLMDYDDIPSDGGQSPGVHHGGEDHFLDDDFEDGSRTPVYDKASKPRKRLVKKSGGGGGRDSYDAPAELLDDYDDRQGRDGSSEGKKR KKFGRDLIGSSGKERKRFSSGESQYGNSSKSGGGSKRGMYSERLVAGKDDGEVKEMWDTIAGGDSEDDQEGLRNMDDDNFIDDTGVDPADRYGSDNEPRS PGVHPQAEEGEDDDEVNRMFKIGKKKKKNERSPAEVALLVENVMAELEVTAEEDANLNIQGKPAINKLKKLPLLIDVLSKKQLQQEFIDHGVLTLLKNWL EPLPDGSLPNINIRAAMLRILTDLPLDLEQYDRREQLKKSGLGKVIMFLSKSDEETTSNRKMAKDLVDKWSRPIFNKSTRFEDMRGVEDDRAYRRPPVRR PVNNGGGMESRDGDLDLDMSRGRNSGQSSSSKQPQLTSRPEATPLDFIVRPQSKIDPEEVRARAKQGAAQDQRRAKMNKKLQQLKAPKKKNLQASRLSVE GRGMIKYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Lus10030992 [exp]	0	1
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Lus10035391 [exp]	1.0	0.9788
AT4G30340		ATDGK7	diacylglycerol kinase 7 (.1)		Lus10015514 [exp]	2.4	0.9537
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10001025 [exp]	4.5	0.9269
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10038827 [exp]	11.0	0.9334
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10000733 [exp]	14.5	0.9446
AT1G31870			unknown protein		Lus10034532 [exp]	14.9	0.8882
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10019609 [exp]	15.0	0.8870
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	15.4	0.9474
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Lus10006496 [exp]	16.1	0.9236
AT5G24890			unknown protein		Lus10009793 [exp]	17.1	0.9374

Compare expression of checked genes

Lus10030992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.