Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32160 390 / 5e-134 Protein of unknown function (DUF760) (.1) AT1G48450 311 / 5e-103 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) AT3G17800 310 / 2e-102 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) AT3G07310 162 / 4e-46 Protein of unknown function (DUF760) (.1) AT5G48590 135 / 3e-36 Protein of unknown function (DUF760) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035392 [exp] 699 / 0 AT1G32160 433 / 6e-151 Protein of unknown function (DUF760) (.1) Lus10000084 [exp] 489 / 1e-175 AT1G32160 304 / 5e-103 Protein of unknown function (DUF760) (.1) Lus10017989 [exp] 304 / 5e-100 AT3G17800 486 / 5e-171 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10041984 [exp] 300 / 3e-98 AT3G17800 494 / 3e-174 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10025896 [exp] 190 / 4e-56 AT3G07310 423 / 1e-147 Protein of unknown function (DUF760) (.1) Lus10038208 [exp] 184 / 4e-54 AT3G07310 407 / 3e-141 Protein of unknown function (DUF760) (.1) Lus10002343 [exp] 164 / 1e-46 AT3G07310 348 / 8e-119 Protein of unknown function (DUF760) (.1) Lus10003162 [exp] 163 / 2e-46 AT3G07310 340 / 1e-115 Protein of unknown function (DUF760) (.1) Lus10002342 [exp] 163 / 3e-46 AT3G07310 332 / 2e-112 Protein of unknown function (DUF760) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G097400 [exp] 447 / 3e-156 AT1G32160 488 / 3e-172 Protein of unknown function (DUF760) (.1) Potri.015G031200 [exp] 313 / 1e-103 AT1G48450 490 / 6e-173 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) Potri.012G042400 [exp] 298 / 5e-98 AT1G48450 477 / 5e-168 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) Potri.002G247700 [exp] 176 / 7e-51 AT3G07310 380 / 9e-131 Protein of unknown function (DUF760) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05542 [flax] [poplar] DUF760 Protein of unknown function (DUF760)
Representative CDS sequence Show only first row Show all	>Lus10030993 pacid=23166770 polypeptide=Lus10030993 locus=Lus10030993.g ID=Lus10030993.BGIv1.0 annot-version=v1.0 ATGCAGACAACCGGAGCATATGCCATGGTCGAGGCGCTGGTCGCGGTTCCGCCGCACGGAGGCCGCGTATTCGGGCCTAGTCCAGAGCTACGCCACCATT CTCTTACTACCTTATCCACTTCCGTTCGATCACCACACCTACTACCGCGGCGAACTGGCAGTAAGTTCCGCTCCCGCTTGGTCTTGAGAGCGTCTGGGAA TTCAGGCGATTCTTCCTCTACTGCTCCGCTTCCTCCGCTGCAGTTTGAATCTTCCGTTGGACAGTTTCTGGAGCAGATTCTGCAGTCGCATCCGCATTTA CTGCCTGCAGCTATTGACCAGCAGCTCGAGAATCTTGAGACTGAGAGAGAGTCTCAGAAAGAAGGAGGCAGCGCTCCTGCTAGTCAGGATCCACTTTACA AGTTAGTGCTCTCCCTTCATGTGTTCATCGTTCATCGTTTGCCATTGGTTGTTCTAGGTGATAAAATAATATACTCCTTGATCGTACACAAATTTCTGGA AAAGGGTATCTCCATGATACCAAGAATAACAACCTCAGATCTTGGCGGACGAGTGGACTTCTGGCCAAACCAGCAGCATCAACTGGAGTCTGTCCACTCC ACTGAAGTCCTGGAAATGATACAAAGCCACTTATCTCTCCTCTTAGGGGATCACCAATCAGTTGGTCCCCTGGATACCATAATAGAGATCAGCAAGATCA AAGTTGGCAAGCTATACGCAGCTTCAATCATGTACGGATACTTCCTTCGAAGAATCGACCAGAGGTTCCAGCTTGACAGGGCCATGAACACCCTTCCCGA AGGCTACGACGAAAATCGAGCAAGGTATGAAGAACTGAGCTCCAACGCCAAAGGGCTGGTGGACCCACAGTCCTTGCTAACCATGATGCCGGATGGTAGC AGAGGCGACGGATATGGCGACGAAGATGGGAAAACGTACAGGCTGAGGTCGTACGTGATGTACTTGGATGCGGAGACACTTCAGCGATACGCAACGGTGA GATCGAAGGAAGCTGTGGGTCTGATCGAGAAGCAGACTCAGGCGCTCTTCGGTAGGCCGGAGATAACGGTTGCTGAGGATGGTTCACTTGGTGCGAGCAA TGATGAAGCGATTACAGTGGCCTTCTCTGGGTTGACAATGCTGGTTTTGGAAGCTGTAGCTTTTGGATCTTTCATGTGGGATTCTGAGAGCTATGTTGAG TCCAAGTACCAGTTCCTCAACGGCTGA
AA sequence Show only first row Show all	>Lus10030993 pacid=23166770 polypeptide=Lus10030993 locus=Lus10030993.g ID=Lus10030993.BGIv1.0 annot-version=v1.0 MQTTGAYAMVEALVAVPPHGGRVFGPSPELRHHSLTTLSTSVRSPHLLPRRTGSKFRSRLVLRASGNSGDSSSTAPLPPLQFESSVGQFLEQILQSHPHL LPAAIDQQLENLETERESQKEGGSAPASQDPLYKLVLSLHVFIVHRLPLVVLGDKIIYSLIVHKFLEKGISMIPRITTSDLGGRVDFWPNQQHQLESVHS TEVLEMIQSHLSLLLGDHQSVGPLDTIIEISKIKVGKLYAASIMYGYFLRRIDQRFQLDRAMNTLPEGYDENRARYEELSSNAKGLVDPQSLLTMMPDGS RGDGYGDEDGKTYRLRSYVMYLDAETLQRYATVRSKEAVGLIEKQTQALFGRPEITVAEDGSLGASNDEAITVAFSGLTMLVLEAVAFGSFMWDSESYVE SKYQFLNG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32160			Protein of unknown function (D...		Lus10030993 [exp]	0	1
AT1G32160			Protein of unknown function (D...		Lus10000084 [exp]	1.0	0.9574
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10018155 [exp]	2.0	0.9292
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Lus10026899 [exp]	12.2	0.8692
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10036014 [exp]	24.9	0.9243
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10022724 [exp]	30.5	0.8839
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10007235 [exp]	33.9	0.9148
					Lus10043316 [exp]	34.6	0.9236
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Lus10003402 [exp]	35.6	0.9217
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10034470 [exp]	42.5	0.8549
AT4G23690			Disease resistance-responsive ...		Lus10024714 [exp]	51.4	0.9128

Compare expression of checked genes

Lus10030993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.