Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27410 59 / 6e-10 B3 Domain of unknown function (DUF313) (.1) AT2G32645 50 / 4e-07 Domain of unknown function (DUF313) (.1) AT3G24850 50 / 1e-06 B3 Domain of unknown function (DUF313) (.1) AT5G24050 47 / 1e-05 B3 Domain of unknown function (DUF313) (.1) AT1G05920 47 / 2e-05 B3 Domain of unknown function (DUF313) (.1) AT2G24670 45 / 3e-05 B3 Domain of unknown function (DUF313) (.1) AT2G31420 42 / 0.0003 B3 Domain of unknown function (DUF313) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030996 [exp] 385 / 9e-134 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10035394 [exp] 252 / 1e-83 AT2G27410 61 / 1e-11 Domain of unknown function (DUF313) (.1) Lus10035393 [exp] 245 / 5e-81 AT2G27410 68 / 4e-14 Domain of unknown function (DUF313) (.1) Lus10027284 [exp] 130 / 1e-34 AT2G27410 67 / 2e-12 Domain of unknown function (DUF313) (.1) Lus10038980 [exp] 129 / 2e-34 AT2G27410 69 / 3e-13 Domain of unknown function (DUF313) (.1) Lus10027272 [exp] 121 / 2e-32 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1) Lus10027286 [exp] 102 / 4e-24 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10009354 [exp] 74 / 7e-16 AT2G31420 57 / 2e-10 Domain of unknown function (DUF313) (.1) Lus10027287 [exp] 71 / 2e-14 AT2G31420 47 / 1e-06 Domain of unknown function (DUF313) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G014700 [exp] 61 / 5e-10 AT3G24850 75 / 8e-15 Domain of unknown function (DUF313) (.1) Potri.015G014200 [exp] 60 / 6e-10 AT3G24850 73 / 2e-14 Domain of unknown function (DUF313) (.1) Potri.019G076500 [exp] 56 / 2e-08 AT2G27410 61 / 2e-10 Domain of unknown function (DUF313) (.1) Potri.011G139000 [exp] 47 / 1e-05 AT2G32645 67 / 6e-13 Domain of unknown function (DUF313) (.1) Potri.013G031600 [exp] 46 / 3e-05 AT2G27410 59 / 2e-09 Domain of unknown function (DUF313) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF03754 [flax] [poplar] DUF313 Domain of unknown function (DUF313)
Representative CDS sequence Show only first row Show all	>Lus10030994 pacid=23166733 polypeptide=Lus10030994 locus=Lus10030994.g ID=Lus10030994.BGIv1.0 annot-version=v1.0 ATGACAATCGTTCGTGATCGTCGCGTTGTCGGCCGCAGGTCTCGGAGAAGATGCGACGGCGGATTGTCCTCCGGTTTGGATTTGTTGGCGGAAGCAGCTT TGTCCGTCGACCAATGTGGATGCGGCCGCAACTCCTCCGACCCCTTTCTTTGTTTCTTGACCGCCAAGAAACGTAAGGCTGCTTTCCGCCGACTCCATCT TTCCCTTTTACTCACTCCTCAGGCTCCGAAGAAGAGGCGCATCGTTTTCCTTCCTCCACGACGACCGCCGTCACCGTCACCGTCACCGTCCGCTGATTTT CCACCCACCGTTGACGACGACGCCTCTGCTCCATTCCTTCTTCCTCTACAGCAGGCTTCCTCTTCTCTCGCTCTAATTCCGGAGAATTTCACACTACAAC GGCCGCCGCCATCACCCGCCGCCTGCTTCTACTCCCCCACGTTTCCGGCTTCAATCACAGTCTCTCCTACTTCATTACCGGTGAGTTTCGAGGCCTCCGA TGATTTCCCCCAATTTTTGAAATCAAGGGTTTCTGATATTGTCGGCGGCGTCTTGGGAAACGCGTTTAATTTGGCGATTCGGAAGAAATTGACCAAGACT GATCTGAATTTCCAAAACCTCCGCCTGTCAATCCCGGAAAATCAAGTCGCTCACCACTTCCTCACCAACGAAGAGAAGCTTCAGTTTGAGAAGGGGGAGA AGATCAAATTAGGGTTTTTCTTGGACCAAAATCTGGAACCCTTCTCCGGAGGTCAATTAACCAAGTGGAGGATGAAAAGCTCCATAATTTACAATGTAAT CGGAGTTTGGAGGTCCGTTCTGGTGAAGAGACAATATAAGCGGTTGAATCTGGAAGAAGGGGATGAGGTTGAGTTGTGGAGCTTCAGGAATTCTTCAGGG GAGCTCTGTTTTGTGATGATTAGCCATGACACTAGAAGAAGAAGTACTGCTGCTGATGATCATGTCGATGGTGATGAGAATAAGAAGGGAATTATTCCAG TTGACAGCGGGAGTGAAACAAGTACTCTCACTGATGAAGAAGAAACCCCCATTGATGACAGTATTGCTACTGGTCTTGATTTGGATCTTAAGTTGTAA
AA sequence Show only first row Show all	>Lus10030994 pacid=23166733 polypeptide=Lus10030994 locus=Lus10030994.g ID=Lus10030994.BGIv1.0 annot-version=v1.0 MTIVRDRRVVGRRSRRRCDGGLSSGLDLLAEAALSVDQCGCGRNSSDPFLCFLTAKKRKAAFRRLHLSLLLTPQAPKKRRIVFLPPRRPPSPSPSPSADF PPTVDDDASAPFLLPLQQASSSLALIPENFTLQRPPPSPAACFYSPTFPASITVSPTSLPVSFEASDDFPQFLKSRVSDIVGGVLGNAFNLAIRKKLTKT DLNFQNLRLSIPENQVAHHFLTNEEKLQFEKGEKIKLGFFLDQNLEPFSGGQLTKWRMKSSIIYNVIGVWRSVLVKRQYKRLNLEEGDEVELWSFRNSSG ELCFVMISHDTRRRSTAADDHVDGDENKKGIIPVDSGSETSTLTDEEETPIDDSIATGLDLDLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27410	B3		Domain of unknown function (DU...		Lus10030994 [exp]	0	1
AT5G38730			Tetratricopeptide repeat (TPR)...		Lus10014513 [exp]	1.7	0.6835
AT1G63740			Disease resistance protein (TI...		Lus10010546 [exp]	4.5	0.7167
AT4G03170	B3		AP2/B3-like transcriptional fa...		Lus10043234 [exp]	4.5	0.6730
AT3G43660			Vacuolar iron transporter (VIT...		Lus10029776 [exp]	5.5	0.7062
AT4G26220			S-adenosyl-L-methionine-depend...		Lus10012913 [exp]	11.2	0.6003
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10010458 [exp]	24.5	0.6211
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Lus10016120 [exp]	27.8	0.6783
AT2G45220			Plant invertase/pectin methyle...		Lus10006103 [exp]	32.5	0.6547
					Lus10013299 [exp]	38.1	0.5779
					Lus10032915 [exp]	42.5	0.5792

Compare expression of checked genes

Lus10030994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.