Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 339 / 2e-115 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G25300 328 / 7e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17010 322 / 2e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 313 / 4e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 308 / 3e-103 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 305 / 4e-102 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 243 / 3e-77 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G38240 241 / 7e-77 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 234 / 3e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G20400 230 / 9e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030934 [exp] 574 / 0 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1) Lus10040112 [exp] 573 / 0 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1) Lus10030941 [exp] 532 / 0 AT1G17010 258 / 2e-84 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022292 [exp] 342 / 1e-116 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10011985 [exp] 335 / 2e-113 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10026173 [exp] 329 / 4e-111 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10011980 [exp] 325 / 5e-110 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10032574 [exp] 316 / 6e-106 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10015252 [exp] 314 / 1e-105 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382400 [exp] 363 / 4e-125 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G381700 [exp] 343 / 7e-117 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G355100 [exp] 333 / 5e-113 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.009G025900 [exp] 325 / 1e-109 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.009G022800 [exp] 313 / 4e-105 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.001G355200 [exp] 290 / 3e-96 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.010G023600 [exp] 289 / 1e-95 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G201000 [exp] 288 / 3e-95 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 266 / 8e-87 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 245 / 2e-78 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10030995 pacid=23166819 polypeptide=Lus10030995 locus=Lus10030995.g ID=Lus10030995.BGIv1.0 annot-version=v1.0 ATGGCGGGAGGCGAACAAATAGAAACCGAAAGGGAGTCGTTAGGTGGCTCAATTGCAGTTGCCAATGTCCAACAGCTTGCTTCTGGATTAACGGATCATG TACCTGATCGGTACATCCGTCCTGAACTCGAGCTCGATCAACTTTCCATTGATGGGTCTCACCAGATTCCGGTAATCGATATGATGAAGCTAGCTGGTGG CCATGATGATGCTGATCAAGAATCCGCTAAGCTCCATTCCGCTTGCAAAGACTGGGGATTCTTCCAGGTGATCAATCATGGTGTTACAGAGGAAGTGATA CAAAAAATGAAGGTGGACGTACAAGAGTTCTTCAACCAGCCGCTGCAAGAGAAGATGTCGTGTGCCCAGTTGCCAAACAGCATCGAAGGATACGGCCAGG CATTCGTCATATCAGAAGAACAGAAGCTTGATTGGGGTGACATGCTCTTCATCCTTTCCCAGCCTGTTAATGGAAGAAGCATGAGATTTTGGCCGACGGT TCCCTCTTCGTTCAGGGCCAGTTTGGAACAGTATTCATCGGAGCTCGAAAAACTGGCATTGAGTCTGATGACTTACATGGCAAGGAACTTAGGAGTTGAG CCAGAGAAGCTGATAGCATTGTTCGAACAAGGAACACAAGGCGTAAGAATGAACTACTACCCTCCTTGTAAGGAGGCAAACAAAGTTATGGGTCTCGCAC CACATTCTGACGCCGTTGGGTTGACATTGCTGACTCAAGTCAACGATGTTCAAGGACTCCAAATCAGGAGAGGCCAGAAATGGCTTCCTATTGTGCCGAT CCCGGGTGCATTCATCGTCAATGTTGGCGACATCATTGAGATAATGAGTAACGGGCAATACAAAAGCATAGAGCATAGAGCAGTCGTGAATCCTGAGAAG GAGAGGTTGTCGATTGCGGCGTTCCACAGCCCGAATATGAAGGCAACAGTCGGACCTCTCTCGAAGCTGATAAATGAGAAGAAGGAACCCAAGTATAAAT CCATATCGCAAGGAGAGTTCATCAAACTCGTGGTGGGTAGCAAACTCGAAGGTAAAGGACTCCTTTCTCCCCTGATGATCAACAAGTGA
AA sequence Show only first row Show all	>Lus10030995 pacid=23166819 polypeptide=Lus10030995 locus=Lus10030995.g ID=Lus10030995.BGIv1.0 annot-version=v1.0 MAGGEQIETERESLGGSIAVANVQQLASGLTDHVPDRYIRPELELDQLSIDGSHQIPVIDMMKLAGGHDDADQESAKLHSACKDWGFFQVINHGVTEEVI QKMKVDVQEFFNQPLQEKMSCAQLPNSIEGYGQAFVISEEQKLDWGDMLFILSQPVNGRSMRFWPTVPSSFRASLEQYSSELEKLALSLMTYMARNLGVE PEKLIALFEQGTQGVRMNYYPPCKEANKVMGLAPHSDAVGLTLLTQVNDVQGLQIRRGQKWLPIVPIPGAFIVNVGDIIEIMSNGQYKSIEHRAVVNPEK ERLSIAAFHSPNMKATVGPLSKLINEKKEPKYKSISQGEFIKLVVGSKLEGKGLLSPLMINK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10030995 [exp]	0	1
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10027147 [exp]	2.6	0.8787
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10038228 [exp]	3.6	0.8492
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10005354 [exp]	3.7	0.8971
AT4G05220			Late embryogenesis abundant (L...		Lus10020065 [exp]	4.5	0.8205
					Lus10021407 [exp]	6.3	0.8952
AT5G05340			Peroxidase superfamily protein...		Lus10032786 [exp]	7.1	0.8915
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10034726 [exp]	7.7	0.7248
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10020526 [exp]	7.7	0.8565
AT3G60290			2-oxoglutarate (2OG) and Fe(II...		Lus10018950 [exp]	8.9	0.8889
					Lus10021406 [exp]	10.2	0.8885

Compare expression of checked genes

Lus10030995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.